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2 genomes BUD3476 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC2528

 - -

Hmu3004

 - - - -

Pairwise sequence scores
Consensus score2193 rrnAC2528 Hmu3004
1626rrnAC2528 2164 606
1173Hmu3004 606 1627 

306 symbols
consensus       MVMARFSGPGLAARLQAAMLDRYERAYRQFARATGVAAAGLAGAWALAAFGVLDLGAATE
#oth            11.1111111.11.11.111111111..1.11.11.111...1.11.11...11...111
rrnAC2528       ::::T:VLTP::R::E:V:FG::::E::L:EQ:VL:V:V:::L::G:::::::P:::G::
Hmu3004         --:S:S:::::L::F:::V::E-SS::::::::::::T::::::Y::LV:::V:::::VV

consensus       SMLAIAAGIAISAFVLMGILQFLVIARALERGNEDVATKAAELEEAAEQLEQAAEELETT
#oth            .1111.11..111..11.11..1.1.111.111.1..1111111.1.....11...1..1
rrnAC2528       ::::T::S:::::::VV:L:::::L:NV:::T:::::::::::::::::::TT:::::::
Hmu3004         :TFE::V:::VTL::::::V::V:::::Y:Y:T:T::-------:T::::::::::V::V

consensus       ADELDNAAATVDDAAEDVEQAADEVEQTADEVEQTAGEVEETVDEVDQAAEQVDQTADEV
#oth            ...1111.1..11..1...11.1111111111111111111111..1111.1.1111.1.
rrnAC2528       :::VE:::E:::E:::::::T:::::::::::::::::::::::::E:T::E:E::::::
Hmu3004         :::::ET::::E:::T:::T::---------------------K:::E:T::::EVT:K:

consensus       ADAAPDTADDDAAERVGEAKDRTDEAKAKADEAKDKADEARDKATDAKDKTTEVKNKTTE
#oth            111111.11.....1.1.111111.111.11.111.11.111.11111111111111111
rrnAC2528       EQT:TE:G::::::K:T:V::K:T:V:D:TT:V:::TT:VK:::::::::::::::::::
Hmu3004         :::D::::-::::::::::TE:V:::T::::::TE::::::E:T----------------

consensus       VKDKTSDAKQTAESVTDEVEAAKETANDVEETAARERETLPADDRLEADDGDDSDMDDGG
#oth            111111111111111111111...1.11.1..11111.11.1111111.1.11..11111
rrnAC2528       :::::::::::::::::::::::::::E::::::EVE::V::::D:L::E:GE::T::::
Hmu3004         -------------------GT:::V:D::K::VE::::V::EKE:T:G::::::::----

consensus       SAEQSP
#oth            111111
rrnAC2528       ::::::
Hmu3004         ------