2 genomes BUD3477 2 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC1156 - - Hmu0945 - - - -

Pairwise sequence scores
Consensus score	3255	rrnAC1156	Hmu0945
2107	rrnAC1156	3200	700
1848	Hmu0945	700	2676

436 symbols
consensus       MAEQRRRLGLELAASAALALRTERWLFLDCGLAAIGFGGWVAATALAAAALGAREAGLLL
#oth            1111.1.111..11..1.111..1.1.1111..11111...11.1111.11111.11111
rrnAC1156       --ME:G::::::RE::::-::::T:::VGV:::WLVY::::L::G:LL:QFSGL:QTV:V
Hmu0945         :::::::---::::::R::VE::::F::::L::::::V::::G::-::::::::::::T:

consensus       ALAGASTQLRALLAGALVAWIVGPALAATLRIRRRLRNRHGNLADAYRLDAPGTLLAIPG
#oth            1.1111111111...1111.1.1.1..1111111.11.11..1111..1.1.11..11.1
rrnAC1156       T:::RTVS::TV:::G:--:L:::S::TVVL:N:::::::::::::::::H:SV::::::
Hmu0945         ::GT::::TL::::::V:::::L::::::::L:S:VT:VS::VESH::F:::::::WP:V

consensus       SVLAGCLAAAIALGQARPATAIALFAGAHLLARTGAFGHRVFSLSRPGLLHAASFLSASS
#oth            1..111.1111111111.1111.11111..11..1.111..111.1.1111111.11111
rrnAC1156       :::L:::LVSLI:::R::L:V::::GTV::VV::V:Y::::YT::V:TF:SLLV:V::V:
Hmu0945         V:::VS::::::SPI:W::Y:V:FV::::::::::::SY::::F:::::V::::::TF:V

consensus       LATAGLVQLGAAAGAGAALRDALAQLGIPPALETALQLTDLQPAQAPALLAAGAVTPAVL
#oth            11.111..11111.111111111111.111111111111111.11111..1.1111.1..
rrnAC1156       :S:GW:::TVT:P:VLS::SPW:T:T::S:VV:::::::GV:::::TP::V:---V:G::
Hmu0945         Y::::V:::::V:::::MV:::M:V::V:T::---FGVV::G:VSV::::::::::::::

consensus       AGAYLFCQLLAAAYVRIRAPTLDRGQRRADQRNPIGQPAASAAGGRARATAQRTVNAESD
#oth            11...11.1..111..111.1111111.11..1.1111111111.1111.1111111111
rrnAC1156       :S::::F::::GTV::::::-:SNP:::P:::F::MP:VRT:ES:TE:P::E::::::::
Hmu0945         V::::V::S:::::::WSE::V:::SL::G::::F::V:::T:::::T::S:--------

consensus       SREQTGDRADTADSGEDRESPGHIQGTRVFDPDEVPAAEPPAHESAPDNAQSSDSGEEPD
#oth            1111111.11.1.1.11111.1.111...11..111111111111111111111111111
rrnAC1156       :::::::::::::T:S:E:::::-T:::::S::::::::::::::::::::::::::::E
Hmu0945         ------T:SS:T::::E:SV:V:::T:::Y:::--------------------------:

consensus       EAGDDAGIDTAHETAGPDDTNKAASATDEAWMDDTSVFSPGGRRAGQSYCRECNASLPPD
#oth            111.11.1..11.11111111111111111111111111.1.1111111.11.11111.1
rrnAC1156       T::::S:T::DS::::::::::::::::::::::::::T::::D::::::S::GE:::::
Hmu0945         :VS:P::::::::-------------------------::V:Q:-----::T:::TFS:G

consensus       ADIRFCPNCGNRLDDG
#oth            11111..1..1111..
rrnAC1156       ::T--::S:::PV-::
Hmu0945         TE::::::::Q:::::