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2 genomes BUD3482 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC2494

 - -

Hmu2692

 - - - -

Pairwise sequence scores
Consensus score1930 rrnAC2494 Hmu2692
1119rrnAC2494 1466 776
1587Hmu2692 776 1940 

260 symbols
consensus       MSDSEAAGTALITGASAGIGAALAREFARHGHDLVLVARREDRLESLAADLERHGVTAHV
#oth            111111111111111111111111111111111111111111111111111111111111
rrnAC2494       ------------------------------------------------------------
Hmu2692         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       VAMDLAADAAADQLWAELEDRGIDIDTLVNNVGVGTHGQFAESDLDAERRQLRLNVMLLV
#oth            11...1111.111.111111..11111.........1.1.....1....1..1...111.
rrnAC2494       --:::DRP:::EE:YE:VTE::L:::V:::::::::Y::::::::::::T::::::::P:
Hmu2692         ::::::::D:P:::::T::::::SVQ::::::::::::P:::::P:::::::Q:::SV::

consensus       ELTRRFIDDFRDAGAVINMGSVAGFQPGANLAGYYASKAYINSFSQALAAEHRDSALDVT
#oth            ....1.1.111.1.1.1.1......1..111.........1....1...1.1.1111...
rrnAC2494       ::::L:::E:D:G:::::::::::::::P::::::::::::::::E:::E:L:KTSV:::
Hmu2692         ::::::L::-::::Q:L:V::::::V:::YM:::::::::V:::::::::::::::::::

consensus       VLCPGPTDTEFQERAGMGDSAVGRTACNTPDAVARAAYRGAAAGDPIVIPRRAMRLIDRL
#oth            .1....11.........1..1..11111..11..1.1.1.111.111.1.111.11111.
rrnAC2494       :V::::V::::::::::T::T::SV:T:::::::S:::E:::::ET::::::S:::::::
Hmu2692         :::::::E:::::::::::::::::L:Y::ER::::G:::LQR:::V:V:GL::TVLVG:

consensus       LRFTPRPAQRRGAALVNQNR
#oth            1111..111.1111...11.
rrnAC2494       V:V:::W:V::V::::::D:
Hmu2692         :S:V:::L::W:SR:::G::