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2 genomes BUD3485 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
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rrnAC3393

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Hmu2833

 - - - -

Pairwise sequence scores
Consensus score1742 rrnAC3393 Hmu2833
1288rrnAC3393 1753 782
1236Hmu2833 782 1731 

239 symbols
consensus       MEPDIDDAARYPMEDDDWIVTVAIGGGASLLAFLIVPAILVTGYLVRAIRARADDARQPP
#oth            ..11.11111....1...1...1...111..1111..111.1..1.1...11111.11..
rrnAC3393       ::S-::::LT::::::::T:::L::::L:::S:::::::::Y::::Q:::K:::G:T:::
Hmu2833         :::::EEL::::::S:::::::::::V:T:::VFV::IFV::::T::::::GME:::E::

consensus       GFDDWEELLKDGLKAALIGIVYQLVPLVVFGVFVGGSIFALATGSRAAAGAGLAGLFGGL
#oth            1.11.11..11.11.11.11..11..1.....1....11.1...1111..1..1......
rrnAC3393       ::E::G:::V::V::W::::::M:::::::::T::::L::::::T::G::::::::::::
Hmu2833         V::E::S:::E::V::V:TF:::F::T:::::::::::V:F::::ET:::L::L::::::

consensus       AISFVLAIVFGYVALAAIANFAREREFGAGFDFATIRTAVMSRDYATAWLYSIALNIAVN
#oth            1111..11..1..11.11111.1111......1111..1.1.11..11..11...111.1
rrnAC3393       ::::::SL::S:::T:::IH::CTG::::::::G:L::L:::PE:::P::V::::F::::
Hmu2833         LLWW:::::::::G::GV::Y::::S::::::V:V:::::T:::::V::::V::::VV:G

consensus       VLANALNVVPIIGGIIAVLLSPFATFYALIIAGDLLADGFAAALDDRDESESDENASVA
#oth            .1111.....11.1111.1..1111..1.11.11.111.111.1.111..1111111.1
rrnAC3393       :VV:L:::::F::SL::::::::::::V:VV:T::W:S:YN:::::::::::VGT:T:-
Hmu2833         :::G:::::::L:::VG:F::----::::::::W::G::::S:T:THV::TV:::T:::