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2 genomes BUD3493 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC1662

 - -

Hmu0634

 - - - -

Pairwise sequence scores
Consensus score1072 rrnAC1662 Hmu0634
829rrnAC1662 1043 506
749Hmu0634 506 1013 

136 symbols
consensus       MSNQRNAEPRGDQWRGMTPADRGLSTADIDDVFELLADWRRRAVCHHFADGDASSANVAA
#oth            .1..1111.11.1.1....1..1.11111.....1.........111.1111111.1.11
rrnAC1662       :::::::G::S:::S:::::::S:::::V:::::V:::::::::::Y::S::QTT::::V
Hmu0634         :T::PTG::D::E::::::R::::TVPM::::::::::::::::VL::V:TE::::T:E:

consensus       LASAISQREMGRDCLDATDTSPSAIRTDLEEEHLPRLDRIGLIDFDRRSEAVHYWGQPTV
#oth            ..1.111111.1111.1111.1.11..1.1.1...1.111.11.1.1..11.1...1...
rrnAC1662       ::::::EQ:-:TSTV::::::::T:::Q:::::::V:H::::::Y:E::G::K:::S:::
Hmu0634         ::T:VT::G:::::::V--V:V::V::::V:V::::::EK:VL:::::::S:::::::::

consensus       EKWADHADAVLRRTDF
#oth            ....1.111.111111
rrnAC1662       :::::::Q::TQ::::
Hmu0634         ::::E:V:E:::----