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2 genomes BUD3494 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC0119

 - -

Hmu1226

 - - - -

Pairwise sequence scores
Consensus score3442 rrnAC0119 Hmu1226
2169rrnAC0119 3354 870
2143Hmu1226 870 3290 

470 symbols
consensus       MVREERSPEQRLGSGLALCVAALLLAASAADPAAAAPRLFVAGASLEENTIAAGDSVNVK
#oth            111111111111111.111.11..1111111..1....1..1...1111.111.1..1.1
rrnAC0119       ::::::::::H:P:L:SV::V::::::T:::::::::::::S:::K:V:::L::E::::T
Hmu1226         --MSSNTTSS:F:T::::L::G::VVS:IG-::L::::V:::::::T:K:T:T::::D::

consensus       AKLRNTGEDDGAGRVEITANGEEIASERYAVDSGGSAKRRRALTFNEPGEYQITANSPKR
#oth            1111...111..11.1111..11111.11..1..1.111111...11..1.1.111.111
rrnAC0119       :TVK:::SSE::MS::YV:::TTK:T::V:::::S::::T::::::T::T::::VK::::
Hmu1226         I::::::::::::::T::S:::::R::N:::E::::RTV:VP:::D:::::E:V:::--K

consensus       SAGTVRVDRATARTIRQRADGRQMRVRGGAVDGTGPYEVEMPSAMNRSLAVDSLTFNASR
#oth            1....1.11.1.1.1111111.111..1...11.1.11.11.111.1111.1.1.111.1
rrnAC0119       :::::Q:KK:::M::::D:TS::TE::::::PT:K::::::::::::TFT:Q:W:V:::Q
Hmu1226         T:::::::::V:::TEY:S:::T::::T::::::::VT:TF:TT-:D:::::::::GT::

consensus       RRFNRNVAEYTDPADADIALPDNDDASVFGGVTVQQAADVDDRRMRIALNRSNIDAADID
#oth            11.111.11....1111111.11.111...1...111.1.111111111.1.1111111.
rrnAC0119       :S:TQ::T:::::::::::V::::::::::V:::GSS:G:QPSS:QFV:::::LQS:G::
Hmu1226         D::::T::T::::ETVPFS::SG:GTT:::::::::::::::::V:::V:Q:V:::T:V:

consensus       ADAVRIYHRTNGAWQAANTSFEEEADDRYVYEARTAEAEALAIGKIEPAFEISRHSLSSE
#oth            111.11.1111.11.111.1111111111....1.11111111.111.1.1111111111
rrnAC0119       :S:::V:::V::S::::E::VV::RT:QV::::D::G:S:Y:::::::::S:T:T:VV::
Hmu1226         S:E:E::SG:D::V:RT::T::GP::G::::::::N:T:T:FV:SVV:V::V:G:T::TS

consensus       QAGEEQRLSVEANVANAGDIAGEYDAQLRVDDAAVNNESVTLGADEERQITLSEAISRDG
#oth            111111111.1.1.1.1.111.1.1.11...111.1111..111111111.1.111111.
rrnAC0119       ::P:G::VV:::T:::D:S:E:P::::M:::::V::QT:::VP::T:QTV:::TVVTTP:
Hmu1226         EN:V:KE:::S:::T::::V::::T:S::::GT::S::T::::PG:T::::V::::::::

consensus       NFRIALNDQNAGEIQVETGDGEQTEADSQQATDGNDGAEPDDEESQTEPADASEPAVDGD
#oth            11111111111.111.11111111111.111.1.1111.1111111..111111.1111.
rrnAC0119       T:Q:KF::V:::::::---------TE::VQ::::G::::ET:PTG::::IQT:::::::
Hmu1226         :Y:V::DE:SV:SVV:::::::::::::G:::G:D:TS:S::G:::::TG:::S:G--S:

consensus       GGLDVPLPASVMEIDTGLTEGAIGGALALIGVLIAALRRGGSRNDSGFEL
#oth            ..1111..11.111111.111111.11111..1111.1.11111111111
rrnAC0119       :::G-::::T::G:S:M:VI:GLL:::L:F::V::L::::::::::::::
Hmu1226         ::F::S::E::S:F:V::::I::::GV:V::::LV::Q:W----------