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2 genomes BUD3495 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
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rrnAC0667

 - -

Hmu0648

 - - - -

Pairwise sequence scores
Consensus score2643 rrnAC0667 Hmu0648
1786rrnAC0667 2508 1032
1889Hmu0648 1032 2596 

360 symbols
consensus       MSARLNGRRGAILALFAAIALAASAAVAGVSAFAQMQQPSGDDVLDETEQRYDAADSITG
#oth            .11111...1111111111111111..1.111.1111..1..1...11....11.11..1
rrnAC0667       :T:D-T:::L::V:V:VT:G:L:VG::::::G:E::G::::::::::::::::::ET:::
Hmu0648         ::P:::::::LV:L:V::V:V:G::::T:--:::TF:::T::E:::GV::::ES:::::S

consensus       TAIVTVENDSASKTATVELAAADENRTRAAVERNNRSYRAGSNGTVAWAVGENRSAAREL
#oth            ..1...1.1.1.1.....1..111.1.111.111111111.1....1.1..1.1.1.111
rrnAC0667       ::::::T:::E:::::::Y:::EP:K:W:::TSE::::EM:T::::V::::::Q:Y::::
Hmu0648         ::T:::::E:::T::::::::D::::::MV::::GETV::::::::::Y::P:::::WSV

consensus       DSLEGEAGEQWTGAEGEYGETEERLAMNGTPDALNAENASATLRGTEEVNDESTYELDLE
#oth            11111111111111111111.1.11.11..1111111.11..11..11.111...111.1
rrnAC0667       --------------------:::SV:::::T:PVPE::VT::::::::::G::::V::::
Hmu0648         :::::::::::::::::::::S::::PD:::-::::S:::::VV::PT:D:T::::VE:T

consensus       HPNADIDAGNTTLWVAQDDYRVHRATADDGTNRTELAVEETNFNVSIDDSQFAPPADRVA
#oth            1111111111.....111....111111......111..1.1.1...1..1.1..1....
rrnAC0667       PT:ES:::P::::::DTE:::::KM:T:::::::::T:::::::::::::::::::::::
Hmu0648         ::E::---:S::::::::::::V::V:T::::::VV:::S:V:D:::H::T:D::T::::

consensus       LTTVDRYDSFDAAQSATDLDLPELDNASFEEARYISRQEETAVAQRYDDDGANVTLLSAT
#oth            1...11...1.........1..111111.1..1111.111.1.1.1.11..1...1.11.
rrnAC0667       V:::ET:::Y:::::::::::::YE:GT:::::::::P:S:::::Q::T::E:::V:T::
Hmu0648         :::::::::::::::::::S::T::-:::T::TVTV::G::I:G:::V::::::::::T:

consensus       AADRLDRDAENATARQANGRNAHAIEREDRAIAYWQNDDVTTAVVVEGSSDRAVAVAEEL
#oth            111111111..1.11111.111111111...111.11.1...1.....11.1..1..1..
rrnAC0667       G:SSYLD::::G::V:V::Q::T::::G:::VV::TE:::::G:::::TT:E::::::::
Hmu0648         :D:::::LT::::E:T:D::TV:VTTD::::::V::::G:::::::::::::::E::G::