2 genomes BUD3497 2 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC0949 - - Hmu1760 - - - -

Pairwise sequence scores
Consensus score	2415	rrnAC0949	Hmu1760
1634	rrnAC0949	2322	787
1568	Hmu1760	787	2268

321 symbols
consensus       MNRRAVGGGIASILCGLAALAAGAVIGLIGTPEPAASGPAAAGALLAIFCVGVALWKLLA
#oth            1..11..1.1.11.1.1111...11111111..1.111111.11.11111.1..1....1
rrnAC0949       ::::H::L:::-V::::LLV:::::::::::::::::::G:::V:VLLV::L::F::::R
Hmu1760         V::L:::::V::::L:V::::::V-------::T:ETIV:S:V::::::G::::::::::

consensus       SPDDDAIALPPPWAADDALFRRALERSRGDDALSGEDLAARLAAAGAQARDDGSVDAGYD
#oth            1.1111111.1..11.11111111.11111..1..111111111.111..11.1.11111
rrnAC0949       T:::P::S-:S::::::GFT:EY::TTPT:::V::T:::E:VE::V::::::::::GSVG
Hmu1760         ::GG:GL::::::TD:G:::D::P:::::E::::::SFG:V::D::QT::SE:T:E::::

consensus       PVREPLRAALTDALVQREGDRAAVEAQLAAGSWTDDQIAAAVLDEGVAPPDRPLRARIRA
#oth            1..11..11.11...1111.111.111........1111.....11.1..1.11...11.
rrnAC0949       ::::::::T::E::::GGH:PDS:K:::::::::::PV:::::::S:::::::F:::L::
Hmu1760         T::PV::R::V::::I:::::::::ES::::::::H::G:::::P::D::P:S:::::E:

consensus       WLFPERAVRRRCARAMAAVAEAADDALPTVPGQRAPRPVPVSAPALADLQRAADGSLQRA
#oth            .....11..11111.11..11.....1...1..1.1.1...11.111....11..11...
rrnAC0949       :::::K:::K:::::::::SV:::::::::V::::::::::V:::V::::::::::::::
Hmu1760         ::::::V:::HLQI:VQ:::::::::V::::::N:S:S::::Q:R:E::::GV::TV:::

consensus       IDPLATARGPRPPGSEARREAIEAEEADADEDARVDRDAEAADDADEPARESDGSGLVNA
#oth            1.11111111111..1111111111111111..1..111111.1.11111.1..111111
rrnAC0949       ::-----------::IPK::D:::S:NGTS::::::::GT:::G:TSSES:T::TT:::D
Hmu1760         V:::::::::::::::::GV:VGV:P::::G::E::ES::PV::::::::::::::--D:

consensus       DERDAFATNGADWGDVTEGAR
#oth            111.11..1.11111111.11
rrnAC0949       :GT::T:::::::::::::RD
Hmu1760         G:::R:::D:--------:::