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2 genomes BUD3505 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC1801

 - -

Hmu0871

 - - - -

Pairwise sequence scores
Consensus score1005 rrnAC1801 Hmu0871
607rrnAC1801 899 241
639Hmu0871 241 945 

135 symbols
consensus       MANDAAADDWKFSVDEVGPDAAAAGNGHDEAYELASDADPEQLEDDPDGDAADEEGAVAG
#oth            .11.1111.1111111111..1111.111.11..1111111111.1111..1111.1...
rrnAC1801       :DD:G::Q:----------::::T::TFT:E::::T:::VI:V:::::::::::::::::
Hmu0871         :::::DS::::::::::::::ET:T::::::V::S:EDV::P:V:ESES::G---:N:::

consensus       SLAPAGEIEPDAAKRENAIFVALGVCIAILALAAMLSPGLGAELQNPLTLGGGLLAVALG
#oth            .11111111.1.111..11..1...11.111111.11111111111111...11.1...1
rrnAC1801       :F::DL:VT:::P:P::V::::::::::::::GR:F---::::MYT:S::::VV:S::::
Hmu0871         ::LS::P:::E::S::::L::V:::YL:VFGF:::::::FVSS:::V:V::::::::::-

consensus       TALLFGFFGLRTPDT
#oth            11111...111.111
rrnAC1801       ::V:Y:::-V::S:V
Hmu0871         --:S::::::L::E: