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2 genomes BUD3512 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
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rrnAC1231

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Hmu3447

 - - - -

Pairwise sequence scores
Consensus score2547 rrnAC1231 Hmu3447
2119rrnAC1231 2554 1586
2014Hmu3447 1586 2548 

342 symbols
consensus       MAGRYEPIDSPDATTLFPYHDLTPPATADVARARRRIRDHLPRTPLVRNEALSAALDADV
#oth            1111.1.11...1..1.........11.1.11..11111...1.....1.1..111....
rrnAC1231       ::::::::::::E::::::::::::TV:T:::::Q:::Q:::E:::::S::::E::::::
Hmu3447         -VSE:S:VP::::::V::::::::::::::YE:::VVD::::::::::::S:::EF::::

consensus       LLKREDTLPTGAFKVRGGVNLAARLDDEFRDAGLIAASTGNHGQSIAWAGRAFDVPVTIG
#oth            1..................1.111..1..111..1..........1.1...1.......1
rrnAC1231       :::::::::::::::::::::V:S::E::H::::L::::::::::::::::E::::::::
Hmu3447         Y::::::::::::::::::T::S:::::::ES:::::::::::::V:Y:::::::::::V

consensus       VPEAANAAKVAALERLGADVQQRGADFDEAREHAEDLAAQAEARYVHSANEPKLLAGVGT
#oth            ...1...1..1.1.1...1.111.1.1......1....1.111.....1...1.1.....
rrnAC1231       :::E:::G::G:::Q:::E:I:Y:E:Y::::::I::::T:R:::::::G:::::::::::
Hmu3447         ::::::::::::M::::::::F:::::::::::::::::::GY:::::::::S:V:::::

consensus       AGLEILDERPDLDRLFCPVGGGSAAAGYCLTLGALTDADVIGAQAAAAPAMRRAWADDTL
#oth            .....1111..1.11.......11.....1.1..1...1.1.1.111...11...1.1..
rrnAC1231       :::::::::::V::V:::::::T::::::T::::M:::::V:V:::G:::VY:::Q:E::
Hmu3447         :::::VETL::::Y:::::::::S:::::::V::::::T:::::SE::::::::::::::

consensus       DAHDRMDTIAEGVATRVPFALPTEILRARLADFRLVSEAAIRRAVARLFENDRIPIEGAC
#oth            111.111.1............1.11.111.11......1.1111.11..1111111....
rrnAC1231       ::L:SV::::::::::::::::::::Q:G:::::::::D::TD:::::::T:::VM::::
Hmu3447         EP::::E:F::::::::::::T:TV::E::DE::::::::L::G:RD::V:EGL::::::

consensus       ATALAAARQAADELAGETIVLPISGRNIDREKLDRILAEAEY
#oth            ..11..11.11...1.1.1.1.......11..1111.11111
rrnAC1231       :::V:::I::G:::R:::V:::::::::::::F::L:::S::
Hmu3447         ::S:::M::R::::::S:::F:::::::EP:::TD::DG:P-