2 genomes BUD3524 2 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC0413 - - Hmu1370 - - - -

Pairwise sequence scores
Consensus score	3951	rrnAC0413	Hmu1370
3036	rrnAC0413	3916	2070
2985	Hmu1370	2070	3934

520 symbols
consensus       MDDPEDGNDGADADERDRHLAALQDLTAAMAAGDGTFQDRIERVLAVGREHLGFPNGHIA
#oth            11..11.1111.11111.1.1.1....1...1111.111.111..1..1....1...111
rrnAC0413       ::::L:::E:S:S:::::Y:::M:::::::::SGT:::E:V:P:::::::::::::::::
Hmu1370         -M:::G:D:T:::S--T:::E::::::S:::D::::VE:::G:::N::C::::Y:::YLS

consensus       AVSDDRHEIAAAAGENAADAPGDERPLSETYCRHTLNDGDIHIILNASESAAADPAYDRA
#oth            1.11.11111111.1111111.111.......1...1.11111.111...111....111
rrnAC0413       V::G:E:KVV:SS:LPSTIS::V:::::::::K:::::SG::::T:::::M::::::KE:
Hmu1370         ::T:::Y:::V:::::::::V::TS:::::::::::S:::LYT::DV::::PD::::::W

consensus       GLEAYVGTPIRADGEEYGTLCFGNDDEARSELDDWQETLLDHLRRWVEAEIERDQAADLR
#oth            ...1...11111.111......1111.11.1111..11..11.11...1.1..1111111
rrnAC0413       ::::::::TL::::S:::::::V:::::I::FS:::::::E::TQ:::::::::I:V:SH
Hmu1370         :::T:::V::EV:S:T:::::::DPS:P::T::P::GV:::T::::::S:L::E:I:S::

consensus       DRNQRLLEATFNSPNTFIGILDADGTLIRANETALGFADADAADVRGEPFCETPWWNHDD
#oth            1111.......1..11.1...11....1.......1.111.11..1.1..1........1
rrnAC0413       EES:::::::::::E::::::::::::::::::::::I:::::::C:::::::::::::E
Hmu1370         :::E:::::::D:::V:V:::KP::::L:::::::S::GV:VD::::H::P:::::::::

consensus       AQAARCRDAIERARAGETVRFEAEHVGADGQRIKTAVTARPVTADGAVREIIAEGLDITD
#oth            11111..1.1..111....1..11......1..1.1.11...11..1.11.11..1....
rrnAC0413       :V:N:::E:V::T::::::::::::::::::::S:S:V::::::::V::K::V::T::::
Hmu1370         E:R:K::::::::ES::::E::GT::::::S:::::::V:::YD::::S::V::::::::

consensus       LQRREEQMDFFNGILRHDILNGMNVIRARAERLAADLDGAQNNHAQTILDWSDDIVDLTQ
#oth            .11.1...1...1..........1.11....1.111...11111.1...1..1...1...
rrnAC0413       :K::::::E:::S::::::::::T::E::::T::DT:::::S:Y:E::::::Q:::::::
Hmu1370         ::N:K::::::::::::::::::::V:::::::E:::::EL:D::::::E::::::E:::

consensus       KVRSVLNTLSDDGLTDAEPIALRAMLEAASKRAASADQDCSLRIDIHDAIEVAADDLLDD
#oth            ......1.1.1....11.111.1111.1.11111.1.11.1111.111111.11.1....
rrnAC0413       ::::::::M::::::E::T:::GPVV:G:T:K:::M:E::T::T::::D:::V:::::::
Hmu1370         ::::::S:::E:::::P::VD:::::::::S:PT::::H::VS::V-P:VT::G:E::::

consensus       VFANILLNAVEHGEPGPSIEVTAERAAEMIRLRIADDGPGIPPARRDAIFERGARRNESS
#oth            .11.111.....111111....11111111111..........11.111..1.1.111.1
rrnAC0413       :VG:::T::::::G::TT::::T::VGP:VH:H:::::::::::E::::::K:E:GT::T
Hmu1370         ::::VM::::::T:SS:::::::TE:::T::V:::::::::::E::PSV::::::::G::

consensus       GTGFGLYFVDVMVDSYGGNIWIEESDRAGSAFVIALPRAG
#oth            .........1........11.1....11.111.11..111
rrnAC0413       :::::::::S:::::::::::V::::L:::D::V:::VR-
Hmu1370         ::::::::::::::::::SV:::::::G:T:V::E:::::