2 genomes BUD3531 2 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC3476 - - Hmu2702 - - - -

Pairwise sequence scores
Consensus score	2127	rrnAC3476	Hmu2702
1560	rrnAC3476	2096	1120
1687	Hmu2702	1120	2098

279 symbols
consensus       MDDIQAQGASIPAIGLGTWQNTGQACRETVRTALDLGYRHIDTAQAYDNERAVGEGIAAA
#oth            .111111.1.1.11......1..11.1...1...11....1....1.1...1..1.11..
rrnAC3476       :::::I::T:V::L::::::L:::S:::::E:::GM:::::::::::G:::Q::L:MD::
Hmu2702         :EHVE:G:::::K::::::::::T::T:::::::::::::V::::V::::::::::::::

consensus       AVDRDDIFLTTKLDRSNRRRRSVRRSTRESLAKLGTDYLDLLLIHWPNPRWMAPLEEPLD
#oth            1...1.1.....111..11111.11111...1...1..1........111111111.1.1
rrnAC3476       ::::E:V:::::::G:::DE:::::::::::N::::::::::::::::TP:::S:S:T:G
Hmu2702         D:::::::::::VW:::L::ET:VSTVE:::::::V::V::::::::H::--V:V:::::

consensus       AMADLRERGLVRHIGVSNFSRSQLRAAADASDAPIFADQVQYHPYKDQRALRDYCRDADI
#oth            ..1111.1...1.1.....11.1.11.1.1111..11...1....11.11.11..11111
rrnAC3476       ::N:VV:E::::::::::::P:L:DR:R:I:S::::T::::::::W:::K:L::::IH:V
Hmu2702         :::E:::::::E:L:::::T::::::::::V:G::V::::L:::::E:S:::E::V::G:

consensus       ALTAYSPLARGRVLDDDALARIGNRYDRSPAQVALRWLVQQDGVAAIPKASSRDHLAANL
#oth            1..........1..1.11.11..11.11................1....11..1..11..
rrnAC3476       L::::::::::G::::P::VQ:::K:GK:::::::::::::::::::::::::E::E:::
Hmu2702         ::::::::::::::G::L:::::D::::::::::::::::::::V::::ST::::::D::

consensus       AVFDFELTDAEMARIRDLEGGFKSKLRNRLQALRRRLPF
#oth            ...1.1...1..1..111111111.11111111111..1
rrnAC3476       ::::::::::::E::::-----P::VKTGV:FV:SQ:::
Hmu2702         :::E:S:::D:::::HE::::::T::::::P::M::::V