2 genomes BUD3532 2 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC1660 - - Hmu0635 - - - -

Pairwise sequence scores
Consensus score	1914	rrnAC1660	Hmu0635
1582	rrnAC1660	1897	1264
1596	Hmu0635	1264	1923

254 symbols
consensus       MDLPAVGLGTMGIDDEAPIARAIDCGYRHLDTAQIYDNEATVGAAIAAADTARADLTVAT
#oth            ....1........11111111..11...........1..1...11...1111.11.....
rrnAC1660       ::::P::::::::E:::VVRT::::::::::::::::::S::::G::::::D::::::::
Hmu0635         ::::::::::::::ETD::::::EL:::::::::::E::::::D::::SPV::DE:::::

consensus       KLWIDALAADAVRPATEASLDRLGLDAVDLLYVHRPRGDYDPASTLPALDAVADAGLTAA
#oth            .....1.1.11...1.........................1.11..1.11..11....11
rrnAC1660       :::::::E:T::::::::::::::::::::::::::::::::ET::::VE::RE:::::H
Hmu0635         :::::R::::D:::G:::::::::::::::::::::::::E:::::S:::::::::::R:

consensus       VALSNFDPDQLRTAREHLDAKIAAHQVEFHPLFRRDELLTDAQEHDYPLVAYAPLAGGRV
#oth            .1....1....11..11..11..........1.1111...1..1........1.....1.
rrnAC1660       :G:::::::::VV:::F::-:::::::::::::W:ES::::::K::::::::::::::::
Hmu0635         ::::::E::::::::T::::P::::::::::Y::Q:::::H:::::::::::S:::::K:

consensus       FDDPTIENIAAQHNSSPAAVAIAWLCSHDNVVTIPKASSQAHLRANLAAADLELDDADIA
#oth            .11.1111..111111..1.1...11.11..........11..1.....1..1.11.11.
rrnAC1660       :EE:::L::::::ETT::::S:::VT:YE:::::::::::S::E::::::::::T::E::
Hmu0635         ::::VL:D::DKY:::::T::::::::::::::::::::P:::::::::T::T::E::V:

consensus       RIEAIDRREELFPE
#oth            ...1.1111..1..
rrnAC1660       :::::E:E::::::
Hmu0635         :::G::E:V::Y::