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2 genomes BUD3537 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC1247

 - -

Hmu1723

 - - - -

Pairwise sequence scores
Consensus score1431 rrnAC1247 Hmu1723
951rrnAC1247 1399 554
1034Hmu1723 554 1438 

192 symbols
consensus       MERGQAYTLEGTIAAIIVVIATLIGLQAVDTGQLNSQADQRSAALETRAEDTLSLAAETG
#oth            11.........111..1..1.111..1.....1111111.1111.1.111.1.111....
rrnAC1247       -M:::::::::VL:::V::T::VY::S:::::PFQTG:Q::T:::::::S::::::::::
Hmu1723         :::::::::::::G:::::::V:::::::::::::::Q::V:EQ:S:QS::V:TVG::::

consensus       ALHNATACWGADKPTLNGNVQSDRNARFERMLNRTFDRQNRNYNLYLSYSNDGVDDRQER
#oth            ..11111.111111111.111111111..1...1.....111....1..1111.11.111
rrnAC1247       ::::::::YSVGT::::::-:TGSSTE::::::::::::GEQ::::F:::DS::--::TV
Hmu1723         ::SEVVR::::::SVVD:T:E::::::::K:::H:::::::::::::::W::S::::T::

consensus       LASQEENQALAERGADAAVATQRITLTDNQPARIGNCCGTAGPEIAEGAFKAPDADEDSI
#oth            11.1111111.111111..1.111..1.111111.111..1111111.1111..111..1
rrnAC1247       :::::SDENV:::P:::::::ETV:::::M:::::D:S::GP:LS:V:GYF::::EP:::
Hmu1723         VI:TS::::::SP:RTT::G::::::Y:D:TIQF::G:::::Y::S:::::I::V::::P

consensus       LYNIVEVRLVVW
#oth            1..1........
rrnAC1247       V::V::::::::
Hmu1723         ::::::::::::