2 genomes BUD3542 2 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC1531 - - Hmu2079 - - - -

Pairwise sequence scores
Consensus score	2132	rrnAC1531	Hmu2079
1139	rrnAC1531	2038	505
1498	Hmu2079	505	2133

289 symbols
consensus       MSNAAPAAAPAGAFEAPDPQFRGISGAYLALLLAPLVLFGAERVGFSDAAALYGALLGAG
#oth            11111.11111111111..1.1111.1.11..11.1..11111..111.1...1111111
rrnAC1531       ---MR:::STG::ST:S::L:G:::::::G:::::P::PVL::::VTE:W:::L::V:TF
Hmu2079         ::::::RS:::LP::P::::::LVV:L:V:::VV:::::::VT:::::::::::VF:I::

consensus       ALLTAVTGWALGRRDGAAVRLGASRARWFPLAIAALGAAVGSFASLGRIGGIAMLAFFLG
#oth            11111.11.1.111111..1..11.1..111111.1111..1.11.111.111111..1.
rrnAC1531       :VV:T::::V:SG:PTV::T:::T::::P:V::::VY::::-:::::MS:VSGV::::F:
Hmu2079         L::V::VT:::::L::::::::N::L:::-:SLP:::LI::::TT:S:::::::VG::::

consensus       LLAALAGLALAVMARSRYTAALLAAADEDGRWRAGWPAAAQRRREWIAAASMIAGVATFA
#oth            .1.1.1.111...111..1111111111111.1.1..11.1..1111111111...1.11
rrnAC1531       :::F:F:V:V:::SQT:::::VT:G:E:LT::::S::ES:::::LY:GG:--::::::V-
Hmu2079         :F::::::L:::::::::VKT::D:V:V::E:T:::::::K::V::L::V::L:::V:::

consensus       GGLAIGAQFDIALLQFPGQFLFAIGAAILGTGQSRDAAATEAGIEIRRGGARRFYAWEEL
#oth            1.1.1.11.111111111.1.111.111111.1111111.11.11111111....1.111
rrnAC1531       -:F::::V:::::::YTS:V::PS:FVL:S::GT:T:V:::N:L:::LPV::::::::::
Hmu2079         ::::V:G::-----W::::::V::::::T:Y:::Q:Y:V:P:::TVE:::F::::E:SHF

consensus       DGYDRDADALVCHRKRRADLRFALADIDDPDAAEGILARRLGRDEVASV
#oth            11.111111..11.1111.1...1111..1111.11.111.11111111
rrnAC1531       ES::L::ES::IT::WG::::::T:E:::VSL::WT::E::SD:-----
Hmu2079         :::T:TD:::::::P::V:V::::D:L:::::V::::S:Y:::S:::::