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2 genomes BUD3544 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
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rrnAC3335

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Hmu1013

 - - - -

Pairwise sequence scores
Consensus score1278 rrnAC3335 Hmu1013
981rrnAC3335 1289 532
829Hmu1013 532 1224 

172 symbols
consensus       MSMESSRGHRAAFGVERVAVWGLAAGAAVALVALAVGAGAAGRTAPPSASFDGQFDADAG
#oth            111.1.111.1111.......1...111.11.1.1..111111111.1111..11..111
rrnAC3335       ::P:::::::GLVT:::::::::::L:V:G::::V::P::DL:::S::VTV::::::E::
Hmu1013         --::V:DYV::::::::::::-::::V:::V:V:::::SG::IVD::T:::::SY:::TH

consensus       TVTITHAGGDRLTDTSTAALALIVTDADRNRSATLNWAEAEREKLAPGDSLSLDDPRVDA
#oth            ...1......11111..11...1..11111111.11.1.1111111..11111...1..1
rrnAC3335       :::L:::::::::::::H::::::::::::::T::T::::::LPVV::::VVV::::::S
Hmu1013         ::::::::::TV---:::R:::V::GESGTNV::V::S:DGG::::::GT::::::T:::

consensus       NGDGNYLDADASVGFPLDAGDTVAVRWTGRPLGAADARTTTLDTYALGANTG
#oth            1...1.1.1.11...1.11.1..1.........11111.1....111.1111
rrnAC3335       ::::::::G::::::Y::S:::::::::::::::P:E:::::::VT::NT::
Hmu1013         D:::D:F:::RT:::::T::V::E:::::::::G:G:Q:V::::::V:::--