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2 genomes BUD3547 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC1246

 - -

Hmu1724

 - - - -

Pairwise sequence scores
Consensus score2311 rrnAC1246 Hmu1724
1394rrnAC1246 2217 605
1522Hmu1724 605 2279 

306 symbols
consensus       MVANERGQLLLIGAIAIAIVIFGTIIQANDLAYTDGIGSNAQADAIDRAADAEAETRAAL
#oth            ...1.......1.111111.1111111111.11..1.111111.1.111.11..11111.
rrnAC1246       :::::::::::::GV:::::V:S::LF:HS::V::::TTTGS::T:E:S::R::SVERD:
Hmu1724         :::-:::::::V:::LFSV::V:VV::L:::Q:::T::::::T::::Q::Q:::::::::

consensus       GRLAARTRNGDDRDEFQAALRNALQNYQNTHNRMTAAGGAAYLNATLNEAASNNEEVNQQ
#oth            11.1111.1.1.11.11111111111.11111111111.11.1.1...11..1111.111
rrnAC1246       :::::E::-:::L:::E:RYE::::::TE::::VVGGS:G:::::::::S:::GT::::T
Hmu1724         YG:DM:V:::T::S:Y:E:::ENVST:::YSEN:::::::T:T:V:::L:::V::T:MT:

consensus       SDDRFNRKQGSGRRPDWDIARDADRASQFNLNESRIKGGGQEFQVKVENDAGDEWRLKLE
#oth            .11111.111111111..1111111111.1.11111111.11.1.1.1111..1.11111
rrnAC1246       :SS::::PG:T:SNV::::::SV:::VV:::TVT::P:V::::I::::G:S::T:KMVVT
Hmu1724         :::PY-:::T:P:::S::LVT::ETV:::W::::SV:T::TS:::V:S:P::::::::::

consensus       GVPVAGPEPDNKDVAVEPPSGSNTACRRSDADDADLNLIAGEDAIGGPPCTFPAFTDALD
#oth            11111111.1111.1.11.1111.1.11.1.1.1111.11.111111111..11..11..
rrnAC1246       -------::G::E:::T:::::T:T:--:G:G:::VD:L::TCD:::T:G::::::ET::
Hmu1724         :::::::G::DV::V::T:TST:::::::::::IE::::D::::MTP:S:::TS::::::

consensus       APYTIEIEKGNRARGGYRIAAIGNFPNTGNDAGDTAERILYPAIDLKYRSPSAAYNRTFA
#oth            1...111......1.1.11.11.1111.1111.1.111111.11.11.11..11....11
rrnAC1246       ::::VS:::::::::T::F:::::::G:SY:S::::PYPVV::V::T:DT:::S::::VL
Hmu1724         G:::::F::::::E:::E::VV:GSV::::F::-:R::::::G::Y::::::T:::::::

consensus       VEEADG
#oth            .11111
rrnAC1246       ::VD::
Hmu1724         :G::GS