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2 genomes BUD3553 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
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rrnAC2949

 - -

Hmu2885

 - - - -

Pairwise sequence scores
Consensus score1040 rrnAC2949 Hmu2885
809rrnAC2949 1014 511
742Hmu2885 511 989 

138 symbols
consensus       MDDMSDRDPFEEIERAFDLLGEQFGTDRGAIPVDVLDKGDAILVRADLPGRDSDAIDVQL
#oth            1111111...1.1.....111....111111......1.1111.1.....11.11...1.
rrnAC2949       ---:::::::S:::::::M::::::V:M:::::::::::::F::H:::::Y::ED:::::
Hmu2885         :::STPT:::::L::::::VS:::::E:TGV::::::T:EE:V::::::::S::::::T:

consensus       EDDRLLTISATSADDREDRDGRYVQRERRRQAARRSVRLPEAVADEATTASYDDGVLTVR
#oth            11.11.....111111111..1..1...11.111.1.......1111......1.....1
rrnAC2949       VE::K:::::::SQE::ST::Q:::::::Q:SLS:::::::::D:GE::::::S::::::
Hmu2885         :::T::::::--:::EP:::::::K:::P::::::T::::::::P::::::::::::::E

consensus       LAKVGHNEDDDGTDIPVN
#oth            .111.1111.1..1.1.1
rrnAC2949       ::::::::::::::::::
Hmu2885         :---:KQSS:G::S:T:E