2 genomes BUD3559 2 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC2007 - - Hmu0478 - - - -

Pairwise sequence scores
Consensus score	2771	rrnAC2007	Hmu0478
2008	rrnAC2007	2672	1391
2154	Hmu0478	1391	2769

353 symbols
consensus       MSALRAQFRDLAEWAADSSPLYARLCREAADDPDILDIAATVPADRAAANLLLAAVHCLL
#oth            .11.111.1.....11.1....11...11.11111.11.1...11.111111.....111
rrnAC2007       ::::Q::::::::::T:::::::H::::::E:S::::::::::EG:Q:PH:::::::Y::
Hmu0478         :TD::EP:L:::::T::T::::E::::IV::E:EL:TL:E:::::::V::VF::::::VV

consensus       RRGPDHRLANYYPSISDDPRAPDDDCGPALRDFCRDHADAIRPLLRDRRTQTNAVRRCAV
#oth            1.11..1..1..1.1111111..1111..1.1..111.1.1....11......1.1.1..
rrnAC2007       D:H::::::E::::::PESQ::::G:F::F:E::L:::::::::::T::::::::::S::
Hmu0478         :::V::P:::::S:VT::::P::G:L:::::::::TY:G:L::::T:::::::E:G::::

consensus       LYPAIAQVAAAADGQIALVEIGPSAGLNLALDRYRYAFRGRDLDEDVRRVGRSDAPVTIR
#oth            ......1.11111.11....1........11...1.111..11111111..1..1....1
rrnAC2007       :::::::::S::::PL::::L::::::::LF:::::DYD::-------V::N::S::::G
Hmu0478         ::::::H:T:QTE:::::::::::::::::::::G:::::::::::::::::::::::::

consensus       ARVRRGDPPLPEDPPAIRSRVGLDRNPLDVTDEADRDWLRALTWPEHDQRRAALDDALAV
#oth            11.11.11...11..111....1.1..1.......11..1..1....11...1.11.11.
rrnAC2007       S::::::S::::T:::::::::::::::::::::::::::::V::::EE:::V::G::T:
Hmu0478         :T:EE:T::::V:::GVH::::V:L::M:::::::VE::G::::::::::::::S::V::

consensus       ARRDPPRLIEGDAIDDLPRILDEIPADVPVCVYNTLVLYQLPAELRAALRALIAARAAER
#oth            ..1...1.....11.1..11..1..1....1.11......1.1.1111.11.111111..
rrnAC2007       ::D:::E:::::ML::::PV:::::S::::::V:::::::V::::SE::T::LE:QM:::
Hmu0478         :::::::::::::::E::::::T:::::::V::S::::::::D:V::N::D:::T::R::

consensus       QLHWLTGRRALDDPGDGLDLRWHRSSADGLKTDRLARYEPHGAWIEWRADGDR
#oth            .......1111111.1111.1.1.1111111.11.11.1...1.11.111111
rrnAC2007       :::::::::D:SG-:ESVE:D:K:W:G::V::TH:VD:::::::LS::P----
Hmu0478         :::::::SG:F::::::::::::::V:GT:T:::::::H:::Q::::H:::::