2 genomes BUD3560 2 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC1459 - - Hmu1939 - - - -

Pairwise sequence scores
Consensus score	2411	rrnAC1459	Hmu1939
1999	rrnAC1459	2412	1620
2032	Hmu1939	1620	2396

316 symbols
consensus       MFRRVSIPTPFQVGPVNAYIARRTIVDPGPDSEEAWSRLLEALEARELAPDDIEQVLITH
#oth            ..1...1..........1.1.1...............1.11.....1.1........1..
rrnAC1459       ::T::::::::::::::::::::::::::::::::::::V::::::::S::::::::V::
Hmu1939         ::::::L::::::::::S:L:G:::::::::::::::E::T:::::S:::::::::::::

consensus       PHPDHFGLANRFAERGARILASEPAAEILEDFAARLDHEQAYFADFFERCGMAAETAETV
#oth            .......1.1..1.....11....111.11...11.11..1..1.......111......
rrnAC1459       :::::::M::::::::::V:::::G:::MG::::Q:HT::S::::::::::VSR::::::
Hmu1939         :::::::::H::G::::::V:::::TP::::::G:::::::::V::::::::::::::::

consensus       TQLPEAFLNYAQSVDTDRALAAGDEVTVDDSELAVDDLQGHSAGEIIFAFDADGRRRAIV
#oth            ........1..1..11..11....1.....1111..111...1..11.11111.1.1.1.
rrnAC1459       ::::::::P:::::::::::::::T:::::T::T::TV::::::::::SY:FQ:::E:V:
Hmu1939         :::::::::::S::TV::SV:::::::::::LV:::::V:::V::VL:::E:::E:::::

consensus       GDNVLADITPNPFLQPPADRGEARPRVLPAFNDSLRRLAKAGHDRFLPGHREDIEEPPAR
#oth            .....1.........1.111.11..1...11....11.111.1....1...111.1.11.
rrnAC1459       :::::G:::::::::V:DE::-T::K::::::::::W:R:Q::::::T::::PV:S::E:
Hmu1939         :::::::::::::::::::D:::::::::RY::::D:::T::Y::::::::T:::::S::

consensus       IDAIRAEHDDRTADVADILDGGATTPSDVMEALFGDLPATEQFAGMSEAVGHLDVLEQRD
#oth            .11.1...11..11.11111111...11..11......1..1.1.............111
rrnAC1459       ::D:L::::Q:::E::::VS::::::::::T::::::::::Y:::::::::::::::VT:
Hmu1939         :E::::::E:::D::ETL::-SP:::VS:::G::::::V::::S:::::::::::::::G

consensus       RVERRESGGVFLYERA
#oth            ...11.....11..1.
rrnAC1459       :::K:::::::V::S:
Hmu1939         ::::E:::::V:::::