2 genomes BUD3561 2 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC1160 - - Hmu0743 - - - -

Pairwise sequence scores
Consensus score	2947	rrnAC1160	Hmu0743
2408	rrnAC1160	2932	1846
2385	Hmu0743	1846	2922

395 symbols
consensus       MMASIESEVNRPNVPADGAKLTAEIDVEPGRQEEDPRRQIALCIDASGSMAGNNIERARA
#oth            11.11111....1..11.111....1....11.1111.1......1....1.11.11..1
rrnAC1160       :T:TVV::::::Y::TG::::::::E:::::L::P:T::::::::::::::::D::Q:::
Hmu0743         -:::::TS::::::::::TTV:::::::::E::T:V::H::::::T::::E:D::K:::D

consensus       GAAWVFGLLADDDYVSIIAFDNEATTILAATRWGDIDRQTAMDAVADISAGGGTDMYNGL
#oth            ..1......111.....1...1.1.11.11...1111.1..1.1.1111........1..
rrnAC1160       ::E::::::DE::::::::::::V::V::P::::T:S:E::V:::::::::::::::S::
Hmu0743         :::::::::::E:::::V:::T:::V::P::::S:L:::::::H:EELT:::::::::::

consensus       LAAKASLQDLATDDNTARRLLLLSDGKDNERDPDAFEGLARAIDDAGIRIQAAGIGSDYR
#oth            11..11.1111.111.11.1.........111.11.11..11..11....11....1..1
rrnAC1160       :E::::::::P::::::::V:::::::::SH::E::GT:::E::TE::::K:::::::::
Hmu0743         K:::ET:SSS::GPD:VK:::::::::::::T::E:::::E::::::::::S::::T::N

consensus       EATIRTLGTAARGEWTHLDAAGDIEDFFGDAVEQAGSVVAPDARLDLDVADGVEVSEVYR
#oth            .1.......11..1....1.1....1...1...1..1......1.1....1.........
rrnAC1160       :E:::::::V:::::::::::::::S:::::::E::T::::::::E::::::::::::::
Hmu0743         ::::::::::G::T::::E:P::::::::E:::::::::::::H::::::P:::::::::

consensus       ALPQAQEVNPDWEANAARVKLPDLIDRESQRVVLKIHAPARDPQDAESLADVQLHARGDT
#oth            1...1.1.1.1..1.111.1....11..1..........111.11111....1.1.1.1.
rrnAC1160       S:::T:S::::::D:T:V:P::::L:::T:::::::::::N:::::V:::::T:::G:E:
Hmu0743         ::::::::S:E:::::T::::::::E:::::::::::::P:E:GSE:V::::::S:::::

consensus       ARDQIGVDYTDDQEKLAEHNEQVDIDHRQTVIRTELGKGNVAAAQTQLERMTRIHGEDAE
#oth            1111.1.1...111.......1..1..1....1........11.1.11.1..1.....1.
rrnAC1160       T:ES:T::::::ES::::::::::V:::::::K:::::::::E:::::::::::::::T:
Hmu0743         :S:::::E:::E:::::::::S:::::K:::::::::::::E::E:KV:Q::V:::::::

consensus       AVQEAERQTRIVKEGGRAEQNRATQIVDSDDGIQK
#oth            ...1...1.1..1....1..11..1..11.1...1
rrnAC1160       :::T:::E::::M::::K::::::K::-T:E::::
Hmu0743         :::::::::E::::::::::SQ::::::::::::-