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2 genomes BUD3565 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
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rrnAC3111

 - -

Hmu2637

 - - - -

Pairwise sequence scores
Consensus score1351 rrnAC3111 Hmu2637
1167rrnAC3111 1344 661
845Hmu2637 661 1084 

173 symbols
consensus       MKRRKFLQTMGVGATAVGSGCLGGGGEVVVSVQQDVRINPGEAWIKEEIPDVSDPGGALQ
#oth            11111111111111111111111111111....11..11.111.11.1......1..111
rrnAC3111       ::::::::::::::::::::::::::::::::::::::::H::::::::::::::::E::
Hmu2637         -----------------------------::::ES::VE::SG:V-:K::::::T:::VS

consensus       YIVRADDRRFNVYLFTDRDQFEQYDAYIKDREPNQTPGGNEEFSQAAVPQPDDEDIYEAS
#oth            .1.111.11.1..1.1111.1.1..1.1.11..11..1.11...11..11.11111....
rrnAC3111       :::K:-:IP::::F::::E::::::T:::G:::::::P::P::::T::-::EGS::::::
Hmu2637         :T::S:::::D::::VGD::Y:H::::V::E::TE::::H::::K::::K::::ST::::

consensus       TDNGGARESLDEAGPYFFAVDHSNYRMENRVDDYDDPLKAFVDLEVIRNRIPF
#oth            .111.......11...1.1.........1...1.11..1.....1.11.1111
rrnAC3111       ::D:::::::::P:::::::::::::::T:::::::::::::::T::::KL::
Hmu2637         :Q:-:::::::V::::Y:V:::::::::::::E:GE::S:::::::VK:::--