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2 genomes BUD3579 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC0901

 - -

Hmu1582

 - - - -

Pairwise sequence scores
Consensus score835 rrnAC0901 Hmu1582
562rrnAC0901 774 372
645Hmu1582 372 835 

111 symbols
consensus       MSSLEMADDDEPQDDADAALPTASADDRDLDLSIPADASQAEAAAIAAAISAHLTDRQRA
#oth            11111111111.11.111111.11.1111.11.1.1...11.....11.....1......
rrnAC0901       -----::TH:T::P:TE:::::::::PD::S:::::::::::::::T:::::::::::::
Hmu1582         :::::PT::E::T::::ETTV:VT:G::E::V:L:D:::SS::::::S:::::V::::::

consensus       AAAAAAARDDGPEYANEWRLAGRLARFGKRRRPQRVERGDEWKAAARARYR
#oth            .1.1.1111111..11..1.1...111....1.11.11.......1.11.1
rrnAC0901       :V:T:QRQT--V::VD:::::::::SV::::P:SN:K:::::::::::::-
Hmu1582         ::::::::::::::::::V:E:::E::::::::::::K:::::::G:SF::