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2 genomes BUD3594 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC2226

 - -

Hmu0435

 - - - -

Pairwise sequence scores
Consensus score1371 rrnAC2226 Hmu0435
985rrnAC2226 1340 705
1091Hmu0435 705 1333 

174 symbols
consensus       MNDPADRANNPFDRVVGHWERVIDDMAATAERHRDDGRRAIDCHPGDVATLTGDPRTDAA
#oth            .1...11111.......1..1..11.1...111.1..111.11.....11...1...1.1
rrnAC2226       ::::::PES:::::::::::Q::E::::::TQY:::::E::EL:::::TV:::E:::M:E
Hmu0435         :S:::Q:::T:::::::P::::::E:H:::::::E::K:V::::::::::::::::::::

consensus       QTGDIEPDTRRLGLDAVLPGDEFRAVAAALRDRDPDRSEVFRARDNGLVFLLLALECGDD
#oth            1..11..11..1.1.1.1..1..11.111.1..111.1.....111.1....11.1...1
rrnAC2226       :::EY::E:::::F:V:V::::::R::D::E::TVE:::::::T:D:M::::V:::::::
Hmu0435         S:::::::-::V::::::::S::E::Q:V::::::::V::::::G::::::::S:S:::S

consensus       LAVLLPLYYDREDAAALRQIAADHGLPSHIRPLSDDERVRVTHDDPELCFPDRS
#oth            11..1....1.11111.111.1.1.111.1...1.1.1.1..11...111.111
rrnAC2226       ::::V::::::TER:D:S:V::::::Y::::::::::V:T:::E:::PF:::--
Hmu0435         V-:::::::E::::D:::S::R:S:F:V:V:::T:G::::::V::::::V:S::