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2 genomes BUD3607 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC2086

 - -

Hmu2612

 - - - -

Pairwise sequence scores
Consensus score1049 rrnAC2086 Hmu2612
859rrnAC2086 1047 614
804Hmu2612 614 1046 

139 symbols
consensus       MRLPSRGRAPRTIAAAGGILYAAGVLAWLRANGVHFASDDSAALAFGAGYALIGLFLIGA
#oth            111..1111.111..1...1..11.11..1..1.11111.1111...11..11.1..1..
rrnAC2086       :::::I:T::S:V:::::::::V:::S::F::S:::S:H::TS:::::S::V::M::M::
Hmu2612         --M:::L:D::V:::V:::V:::V:F::::::::YW:T::V::T:::V::::V:::::::

consensus       VPLYLCSRLSLVTPAAATLWLLGNTVHQWAYGIHLHPLSSYLTVWPLLLGIALGAGLAEA
#oth            .....11.......111......1..11.1..1.........1.......1.111.11..
rrnAC2086       ::::::::::::::VFV:::::::::YE:L::::::::::::::::::::::V:::VI::
Hmu2612         :::::LV::::::::::::::::K::::::::T:::::::::V:::::::F::VP:::::

consensus       GVRIGLDRGVDRGGLRPLV
#oth            1..1.11.1...1..1...
rrnAC2086       ::::::S:::::F::::::
Hmu2612         L::Y:T::F::::::G:::