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2 genomes BUD3608 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC1499

 - -

Hmu1972

 - - - -

Pairwise sequence scores
Consensus score969 rrnAC1499 Hmu1972
838rrnAC1499 966 776
907Hmu1972 776 968 

127 symbols
consensus       MSFDVPDDCRYLDSHEWVRQADDAAEIGISAFAQDELGDVVFVELPDEGAELTAGEDFGV
#oth            ........1...1......1.1.1.11..11..................1......1...
rrnAC1499       ::::::::L:::E::::::V:G:T::V::T:::::::::::::::::::T::::::::::
Hmu1972         :::::::::::::::::::::::::T::::D:::::::::::::::::::::::::E:::

consensus       VESIKAVSDIYAPVSGTVTAVNDALRDEPELLNDDPFGDGWLLEIELADGSELDDLLSPD
#oth            .........1.............1.1.....1.1.......1.11.1111..1.......
rrnAC1499       :::::::::V:::::::::::::R:::::::::E:::::::M:TV:VD:K::T:::::::
Hmu1972         :::::::::::::::::::::::::F:::::V::::::::::::::::E:::::::::::

consensus       AYRDQIA
#oth            1..1..1
rrnAC1499       ::::::E
Hmu1972         E::E:::