2 genomes BUD3726 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - pNG6103 rrnAC1063 - - - Hut2388 - - -

Pairwise sequence scores
Consensus score	3616	rrnAC1063	pNG6103	Hut2388
2101	rrnAC1063	3253	1630	1726
2654	pNG6103	1630	3449	2159
2927	Hut2388	1726	2159	3959

534 symbols
consensus       -------MRSDARGRDRSIDLRFAL---GIAALIAQLDG-GRQAG--------ALGDIIV
#oth            111111121222222212222222111112222212221112121111111112...111
rrnAC1063       :::::::------------------:::-----------:MT:--::::::::S:::VF:
pNG6103         ::::::::::PV:FLV:::FVF:G:LTT:T:PVL::S::::SDG:::::::::::::::I
Hut2388         VEGTVTRT:T::S::::TV:::P:::::::L::::T:G:S:::::VRRMGLLDG::::::

consensus       DALQELLRILFSPIEAAIQNHGDALLRLVVQTPHPDAVFAQPTNGAWPAIYDYYWETIVP
#oth            2.1111.21.11.1122122111.11221.2..1..1..21.1.12..2112....111.
rrnAC1063       :::ERF:KK:VD:VFGFVGDNIG::ID:I:T::R:::::S::S::G::S::T:::::M::
pNG6103         S:I::::E:::::::TV:E:::::V::T::G:::::S::N::::A:::G:::::::M:I:
Hut2388         G::::::::::::::::::S::::::EV::::::::::::A::::P:::VHG::::::::

consensus       LSLSLWGLSIGVVILLESTSHLFSGYHRSKLKKRAFAGLLGILSWWWIAALSLRFMDALA
#oth            .1.1.1..11.11.1........11...1.......1..1.......21.1....1.1.1
rrnAC1063       :T:L:::::L::I:::::::::::::::T::::::::::::::::::M:::::::I:G:V
pNG6103         :::::Y:::::I::F::::::::N::::::::::::::::::::::::S:::::::::::
Hut2388         ::::::::A:::::::::::::::N:::::::::::S::I:::::::L::F:::::::::

consensus       DFLVPSLDEIALFETLSFAAMGVIGLVIALTLDLALFVIIGLIYLARQLALYLFVLLMPL
#oth            2.11..121.2..1.2..211.12.11211121.21.1211....2..11...1.1...1
rrnAC1063       ::I:::::S:G::::V::G:::LS::TL:A::::TI:LVLA::::V::M::::Y::::::
pNG6103         G:::::VS::S::Q::::TG:::L:T:V::STN:L:::L::::::::::::::::F::::
Hut2388         K::L:::E:::::::M::::I:::::::S::V:::::::::::::I:::V:::::::::I

consensus       LIVFWIPGVGPFALVSRFMKKLAGFYVPFLFMTVPVALLFRLGDLLGDSAGLSAGGFGAW
#oth            1..1.1..1...11.111.11...........1..1.1...1.21..2.212.1.11.2.
rrnAC1063       V::::V::I::::P:A:L:SR::::::::::::::I:V:::::E:::::VTV:I::::Q:
pNG6103         ::::::::::::::::K:::::::::::::::::::::::::::I::T:F:P:::E::::
Hut2388         :::L::::::::T:::::::::::::::::::S::::::::V:G:::Q::::::::I:T:

consensus       LTALVIPLAAVASPFVLFWQAGALFFMADRAARHGSARRARRRLATGREQVQRAGQGGRN
#oth            .1.1.2.12..21..........11.1.....1.2.121..2.2211211111122111.
rrnAC1063       :L:I:T::I::IA:::::::::::::::::::Q:::R::::D:K::VETAGE:GTL:LK:
pNG6103         ::::::::L:::::::::::::::::I:::::::M::EK::S::SR::::::S:K:::::
Hut2388         :::::V:F:::L:::::::::::IM:::::::::V::Q:::::TT::K:::::::HA:::

consensus       FARGVRDQPAVRSDGQEVLGSGDSRAHAAGRRVNRTGSRLRDAIRRGG--GGGGGNGGGD
#oth            12..11121.1112..2.11..1.2.122.11112.111.12222212111111122122
rrnAC1063       LR::LAG:S:I:AS::::::::S:S::TV::K:DQ:KRT::-------::---------S
pNG6103         :V:::::E:::K:G::Y::N:::::::ST:Q:L:T::::::E::TD:S::::::::S::G
Hut2388         :::::::K::::::::T:F:::::T:N:::::::::::::G:RF::::DD:::::S::S:

consensus       RLGNGNDD-------------------------SDAGRSTREDSDRSDRSRRSADRSGRS
#oth            11.2122.1111111111111111111111111111.21122.11211212212112221
rrnAC1063       :::TSTT::::::::::::::::::::::::::-:S:T:E:S:P:P::E::T::::T:EK
pNG6103         N::G::::::::::::::::::::::::::::::T::ST:S:::---------------:
Hut2388         :Q:::GS:RRSNGGTRESRTDESAGRSDAGSGG:::::::TT::::::::D::G:::S::

consensus       GNDGGREDESDEFDRDADPGR-----DAERDEDTRSRNNDDADDNPRYIG----
#oth            22.11222212.21112221211111.1211221212221111.2111121111
rrnAC1063       TP:DDH:S::T:S:PFDE::S::::::::SV:TDE:DGDS:D:::::::Y::::
pNG6103         :::::-----E:::::-----:::::::F::PQ::N::P:S:::P::::H::::
Hut2388         SD::::S:S:::TS::::S::TETSR:NL::S::T:ES::::S:DSSSA:EGNE