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2 genomes BUD3727 3 proteins
a Hsa
Halobacterium
sp. NRC-1
b Hma
Haloarcula
marismortui
f Hvo
Haloferax
volcanii
g Hbo
Halogeometricum
borinquense
h Hmu
Halomicrobium
mukohataei
i Hut
Halorhabdus
utahensis
j Hla
Halorubrum
lacusprofundi
q Nph
Natronomonas
pharaonis
x Hwa
Haloquadratum
walsbyi
-

rrnAC0803

- - -

Hut2865

Hut2960

- - -

Pairwise sequence scores
Consensus score3982 Hut2865 rrnAC0803 Hut2960
2226Hut2865 4018 1789 1774
3335rrnAC0803 1789 4005 2946
3343Hut2960 1774 2946 4035

528 symbols
consensus       --MTRTVVVGLDGASWRLLDPWIEAGRLPNLAALRDSGAWAETRSCLPPVTFPNWKCYSS
#oth            11112.1.1.....1.2.11...11.2...1.1..11.211211.1.....1......1.
Hut2865         :::NP:::I:::::N:P:IE::::E:::::I:R::E:::SGIS::H:::::C::::::A:
rrnAC0803       ::::K:L:::::::::E:::::::::E:::::::::T:T::G::::::::::::::::::
Hut2960         MTG::::::::::::::::::::D::D:::::::::::S::::E::::::::::::::::

consensus       GKDPGGFGVFWFERVDLDEGTIAVADGGDYDTAELWDYLNDAGRSTGVVNMPTMYPPRDI
#oth            ..1..11..1.1.21.111111212112.1211......112.211....1.11....21
Hut2865         ::N::KL::Y:W::I:T::R:M:LP:ST:FTSP::::::::::HR:::::L:MS::::KV
rrnAC0803       :::::::::::::N:::AA:E:N:MN:::::::::::::::E:Q:A::::::::::::::
Hut2960         :::::::::::::H::::::::T::::S::H::::::::AAD::::::::::::::::G:

consensus       DGA-IVAGGPDAVEGEYRSISGGYTEPPELAAEIESRFDYRVHPDPLLSSNDERGAEVEA
#oth            .1212.....111.1.1111121..2..1.22.1.1....2...111.1..111111..1
Hut2865         ::V:M:::::RSR:D:-------:::::A:Q::::D::::::::ANV:T::EDSDRA::M
rrnAC0803       :DL:V::::::::::::::::S:::S:::::E:L::::::S:::::::::::::::::::
Hut2960         :::S:::::::::::::::::::::H::::ES::::::::Q:::::::::::::::::::

consensus       ILDLLEKRFEVAHALLEERDLDFVHVTLFYLNVLHHFFWDAEPTRRAWQRVDEALGRLAD
#oth            11.1..2.1.1.22.11...1..1.....1....1.1...211121..221.12111121
Hut2865         VQ::::T:L:T::::::::::::L:::::H::::Q:Y:::GPE::E::E:I:A::EPFVE
rrnAC0803       ::::::::::::TT:MD:::::::::::::::::::::::D::SL:::KI:::WV:::D:
Hut2960         :::V::M:::::LW::::::R:::::::::::::::::::::::H::::L:::Y::::::

consensus       RDDLNLVLMSDHGCAATDTEFYANEWLAENGYQARDASVDARLRRIGLDRERALGVAKRL
#oth            2211.1.......12212.1..2.1..1.1..1212211122.211.111.221111111
Hut2865         -GEY::::::::::TEI::V::::R::E::::LSTES:LAS::HGM:FTQ::VA:IVRS:
rrnAC0803       :E::::::::::::D::Q::::I::::::::::V::T::::V:T:::::::NL:A::::A
Hut2960         I::::V:::::::S:P:T::::V::::::H:::::T:T::DT:::::::::T::::::::

consensus       GLVDILARVVPERIQALVPQRDGVKRDRKLEAIDLARTKVVASGQGPIYINPAFDA--ES
#oth            .11121121..1111211.121.11.11..1111122.111.....12.2.111.2111.
Hut2865         ::EQYIRPL::R::IERF:SD:::V:QE::KLV:W:N:D:I:::::LL:V:A:D::ER::
rrnAC0803       ::::::::::::S::Q:::::::::::::::::::EQ::::::::::V::::R::V::::
Hut2960         :I::V::T:::::L::::::QA:L:::::::::E:D:::A:::::::::L:::::D::A:

consensus       VRESLMADLAEVEDEEG-PLFDAVYRGEDVYNGPYVDAAPEIVLDQRPGVHVNDGIGGGE
#oth            1111.1...2111122.1.11221..1.11.2....121.1212.1.....11112.1.2
Hut2865         ILTD:E:::::ATGTT:E:ITG:I::P:EI:E:::::L::DLIF:::::::TSGAM:D:P
rrnAC0803       :::::::::S:::::H:::::TD:::::::::::::::G::V:V:::::::::::::::T
Hut2960         :::::::::RA:::S:::::::G::::::::S::::ED:::::::M:::::::::V::::

consensus       ITSGPDRWAAENTPDGIFLANGPDFAAQGDLDRISILDIAPTVLAAAGCAVPRDMRGEVL
#oth            1111.11.11..112.11112.1.121212.11.1.1.11..1.212.111.2.12.1.1
Hut2865         V::E:AD:RG::I:::LV:FH:E:V::T-::GS:K:S::T::::HWM:E:::E:VD:::V
rrnAC0803       :Q::::::::::::Y:::A:S::::EP::E::::::::::::::::H:::I:T:::::::
Hut2960         ::A::::::::::RH::::::::::T:S:Q::::::::M:::L:V::::D:::::T:D::

consensus       --PIAAGDP----AIGRRDPL--RIDDAARGDAGDAVEDRLQQLGYME
#oth            11122211.11111212.1.1111122221112122.11..211..1.
Hut2865         LSAF:D:S:TATR:VRT:S::PG:GSGS::::LDSD::E::EDI::L:
rrnAC0803       :::VFPE:::::::::E::::::S:E::LGS:D::::::::K::::::
Hut2960         ::::V::::::::DW:::::I:::::EGG::E::EE:A::::::::::