2 genomes BUD3728 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnB0162 rrnB0166 - - - Hut2738 - - -

Pairwise sequence scores
Consensus score	1678	rrnB0166	Hut2738	rrnB0162
1140	rrnB0166	2827	660	348
1124	Hut2738	660	1877	383
532	rrnB0162	348	383	744

398 symbols
consensus       ------------------------------------------------------------
#oth            111111111111111111111111111111111111111111111111111111111111
rrnB0166        MSPRHLTVHVPEFTDDIVSTGFDAAEEVGFDIDRDQESDDGEWPYYNGNYNKTTVSFMFD
Hut2738         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnB0162        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       ------------------------------------------------------------
#oth            111111111111111111111111111111111111111111111111111111111111
rrnB0166        ISSDRETYERVLSVGLSDILIPSNWSDEQNYAEFVTAVVNLACELAVAYDAEYVPLFQTT
Hut2738         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnB0162        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       -----------------------------LAELGDFDALFDAEPWRYAELDDGRTFAIES
#oth            111111111111111111111111111112212122121222211221112212222221
rrnB0166        KHNTIAPTGMPFAEHIDQVPQLAVYSETLFE:::G::::YGGT::::::::S:HV::MT:
Hut2738         ::::::::::::::::::::::::::::::::F::V:N:::::::YV:::E::::VV:::
rrnB0162        :::::::::::::::::::::::::::::-------------------------------

consensus       AGPWNNSEFENLKRRD-IQRAEIRTDIDQS------------------DPFMALDPGEYG
#oth            221122122222222112212122122122111111111111111111111221211111
rrnB0166        D:::E::::T:::::::L::G:TV::L:L:::::::::::::::::::::::T:::::::
Hut2738         :S:::E:GW:PPTDT:Y:E::::::T:::TDPSAQPEGQPRDGSTGKF:::T::E:::::
rrnB0162        ----------------:-------------::::::::::::::::::------------

consensus       ADAGIHKDDIAPEFRNEALQLERVYRADHDDLRRADDDAFVRRLIDDA--------NMLA
#oth            2122222111222121121212111222222111222221112222221111111121.1
rrnB0166        T::V:T::::::::T::::T:::::::ES:T:::VE::S::::::::G:::::::::V:G
Hut2738         ::V:V:P:::TSI::::D:::V:::VD::G::::::GG::::NVVSK:ANDKELVQK:::
rrnB0162        ------------------------------------------------::::::::-:::

consensus       NIPDDANDDARRISALLRDAIPPAFVRLDAPDDESIVTKVMALDIETNKIQLLVSLGQAA
#oth            22.2222212222...1222........12.11.11.11112.12111.22...1.1121
rrnB0166        EL::GVDT:DE:L:::IEGS::::::::N::N:::::S:TL::::::S:FE:::N:A:T:
Hut2738         :::LES:EE::L:::::HE::::::::::G::::N:::R::D::V::::Y:::::::::V
rrnB0162        DV:S::T::NLYV::::::V:::::::::D::N::V:::::R:ETDV:::K::::::RV:

consensus       RQADASADDIAKIEGALDTLAEMDDAENIDQYIEAKLL
#oth            1221212122121.11..1.2.11.212..11..11..
rrnB0166        :S::V:D:VM:T:::V::Q:S::::QDG::::::Q:::
Hut2738         --EE::GEP:::::S::::::::E:::D::SW:::N::
rrnB0162        ::D:FT:::LGSM:::::::N:L::N::::::::::::