2 genomes BUD3740 2 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC1143 - - - Hut1242 - - -

Pairwise sequence scores
Consensus score	1622	rrnAC1143	Hut1242
948	rrnAC1143	1512	349
1023	Hut1242	349	1495

219 symbols
consensus       MTEMRAADDGACPRCEEPLEAGADACPECNASIRTAEDGLTDEAADAIDERLLENAEARD
#oth            11111111111..1.11..111.11..1.1111111111..1.1.1111..111111111
rrnAC1143       :::W:D:S:P:::E:G::::PT:M:::H::::L------::::Q:EML::::T:TL:SM:
Hut1242         ---:S:P:E:S:::::T::-::::E::::GLT:::::::::S::::::V::T:S::S::Q

consensus       PGGRTLAYALRLASALAIGIAIAPLSAFALTILVGAHPIPIAIGVGLAGWLAPAAYLARL
#oth            1111.1111.11111.111.11...111.111..1111111111.1111.11...1.1.1
rrnAC1143       S:TP:W:V::---TG:SL:::::::VLY:VV::::DLSL:V:V::L:::::G:::::S::
Hut1242         :S::::P:P:::::::::S:PF:::::::::S::P::::-:V:L::MLS:M::::V:::T

consensus       RNPSEILARGLYLLGAGVAATPLVVAGERLLVGSAAADNPPIDGEQAIYGALLLLGLAIL
#oth            11..1111...1111.1..111...11111.11111111.11111.111111111..1.1
rrnAC1143       :::::V:::::::VV::::VVV:::GY:V::-----S:G:SVVS::T---::VS:::::P
Hut1242         PV::L:VG:::VV:::V::::::::::G:M:::::::T::::::S:::::SF::F::L::

consensus       AALGALIARRAARRADRDARQDAGPRRRRFGIDDDEPDN
#oth            1.1.1111.1.1.111.1.11111.11111111111111
rrnAC1143       :::::::::::::::::Q::GEP::LHE:::::::::::
Hut1242         I:-:MTVS:V:D:K--:::W:::S::::E----------