2 genomes BUD3742 2 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC2930 - - - Hut0546 - - -

Pairwise sequence scores
Consensus score	5007	rrnAC2930	Hut0546
1652	rrnAC2930	2601	643
3998	Hut0546	643	4999

661 symbols
consensus       MATDDEGIVGEELLTKTGSGGLFSSGFLAGDPIESYLDPSEQPRVVFATDGRGIIEESPR
#oth            11111111111111111111111111111.111111111111111111111111111111
rrnAC2930       -------------------------M:VV::-----------------------------
Hut0546         ::::::::::::::::::::::::::Y:::E:::::::::::::::::::::::::::::

consensus       GQTTYEPGSDYRTLGALTTRRVILVVGGGAADDGDRFIEIDLEDIDAVRCDSELRRSTLR
#oth            1111111111111111111111111111111.....11111111.11.111.11.1.1.1
rrnAC2930       -------------------------------:::::T:SLPY:::V::::T:G::T:::E
Hut0546         :::::::::::::::::::::::::::::::::::::V::::TE::H:ET:::S:::V::

consensus       IWTVDDDCWALECETGDLQPIREFLDAASQTRIRFDRELDRARDAIEAAARAIRAGDLES
#oth            111.1111.1111111..111111111.1.111.1111.11.111111111111111..1
rrnAC2930       :V:::E::::F::K-:::T:V:::V:E:T:VWT:TLT:::::ESQV:::VT:LE:T:::T
Hut0546         M:-:G:HV:E:SP::T:::T:ETY:S:::::::::::L:GD:::::VDV::Y::S:Q:::

consensus       AADAIDAADRALDNAREAAEALEADTAAIDDRCQSHRARIRTCQRRRHLAAAEDHRARAR
#oth            ..11111.111.1111111.111.1111111.111111111.1...111111.11.11..
rrnAC2930       ::TH:T::QE::::G:GRV:::::-::S::E::::TQ:Q:D:::::::VS:::Q::DT::
Hut0546         ::::L:R:::S:HD:S::::SFP::VP:MS::LET::D:Y::E:::LL::RV::M:::::

consensus       RAWRAAAYERAADAYARAKEACERALARGDAPEAPTAEIADARSAIEADLARLLSAPLDA
#oth            11.111...1...1.11.1111.11.11111.111.111111..1..11111.11..111
rrnAC2930       :::ENR::::::::::Q::TEY:::::V-T:::P::ET::::::::::EY:E:::::V::
Hut0546         EK:::::::Q:::R:Q::S::::TL:D:::L:P:V:::LRET::G::R::D::SV:::EV

consensus       ARTAARAARAASDPAARAERFRDALDRYRTALELDWGRPNRRFAGDRASIRDALADIASA
#oth            .111111.11111.11..11111.11....11......111..1.11111111..1..11
rrnAC2930       :QV::S::::TT::::::THWE:::::::::Y::::::-D:::D:::::L:Q::::::VE
Hut0546         :::YH:V:MD::L:ED::::::T:YE::::V:::::::::P::::ETDV:I:R::T::::

consensus       LLDARRRAAAQHRREAIRESRIGARASAGAACADARAHLEAARETARELDPDALEAFRER
#oth            .111111.11.1..11111111111111...111.11.1.1.1.1.1..1..11111111
rrnAC2930       :V:TH:E:GR:K:::GSE::K---:ETP::::GS:T::F:R:::V:T::V::--------
Hut0546         ::T::S::::::::V:::LT::::T::::::Y::::D:::::I:::::::::::::::::

consensus       LQVVEDRIESVPEDDDRGGSADHVLGDVATPIRPLADGEPCDIRPVRTEEVLPAVPKRPA
#oth            111111111111111111111111111111111111111111111111111111111111
rrnAC2930       ------------------------------------------------------------
Hut0546         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       DGDTTLAVGTPTDEPPRTLAVRQPYQDCNGTLAVPHAIFTPRTGFVQQVQTLQDAALIDS
#oth            111111111111111111111111111111111111111111111111111111111111
rrnAC2930       ------------------------------------------------------------
Hut0546         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       VRTIWEALGWTVERTDSEDMALLGTRPDAATRLRLRIRRREDPADPSVVSDLAPDRDGPE
#oth            11111111111111111111111111111111111111..11.1.111111..1111111
rrnAC2930       --------------------------------------:::P:::-----E::-------
Hut0546         ::::::::::::::::::::::::::::::::::::::::G::V::::::::::::::::

consensus       SDLCPVLVTTDPVQPAAYEAAAEAGVSIVDRHRLADLWYLTTERADRTGDEQEREAEPKG
#oth            11111111111111111111.111..1111111111111111111111111111.11.11
rrnAC2930       -------------------::S:Q:::V--------------------------:S::::
Hut0546         :::::::::::::::::::T::S:::T:::::::::::::::::::::::::::::P:PS

consensus       R
#oth            1
rrnAC2930       :
Hut0546         -