2 genomes BUD3745 2 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC2477 - - - Hut2983 - - -

Pairwise sequence scores
Consensus score	2962	rrnAC2477	Hut2983
2203	rrnAC2477	2654	1602
2361	Hut2983	1602	2910

384 symbols
consensus       MDNDPADSSSDQRAADSDDLAPVAQRLIEGIDSHAIFMLDSDGAITEWPEPAAALYGYDA
#oth            .111.1111.111111...111.11..1.111...1....1..1..1..1..111....1
rrnAC2477       ::T:::::::::QT:::::--S:SE:::::LS:::V::::T::T::T::::::S:::::R
Hut2983         :G:T:V---:HE::EP:::::::::::V:S:::::::::::::::::::P::T:M:::::

consensus       DATLGQDVDMLFADGDEMEAGDPPDGLLDDAAEGPVETQHWHRRADESVFWATLSLSQLE
#oth            1111.11.11..1.1111.11111111.11111.1..11...1...1....1..1..1.1
rrnAC2477       :::V::H:::::::PE:::T--TVES::IEV:S:::::::::::::G:::::::::::::
Hut2983         ERV::E::SS::T:::GT::::::::F::::T::T::VE:::E::::::::G::T::P:-

consensus       DGDDEGFAAISQDETEAHQYDRMLERQNDRLKEFTDILAHDLRNPLNIIGGRLQLARQTG
#oth            1.111..1.1.1.1.1111.11....................11..11.11111.111..
rrnAC2477       ::ELT::V:V:::T::K::::K::::::::::::::::::::KS:::V:SS:VH::::::
Hut2983         S::::::::::H:::T:KE:E:::::::::::::::::::::::::S::::T:::YEE::

consensus       DDAHIDAIEETSDRMARLVDDLLRVARQGNVVTDPEPTAIGDVVDAAREGADGTAERAIL
#oth            .11.11111..1.......1...1.....1......1.1111..11.111111..11111
rrnAC2477       :EE:L::L:::::::::::::::S::::::::::::T:NVK::::T:W:::G::::::T:
Hut2983         :::::ET:K::T:::::::E:::::::::D:::::::::::E::E:::PVV:T::GGT:V

consensus       YHDHVGSVNADADRLCQLFENLFRNAIRHSSTSPGSQARQNAVEHGSASPDTHAGGETPG
#oth            .111.11.11.....11......1.111..111111111111111111111111111111
rrnAC2477       :Y::::::S::::::IE::::::Q:S::::------------------------------
Hut2983         ::E-:PT::G::::::::::::::::VE::::::::::::::::::::::::::::::::

consensus       NDGTVIIRVGPLDHGFYVEDDGPGIPADQKDDVFDHGFTTAEDGSGYGLSIVRTIANAHG
#oth            11...111....11............111.1.........11........1....11...
rrnAC2477       -:::::V:::::::::::::::::::::I:::::::::::::::::::::::::::G:::
Hut2983         :S:::T:T::::ET::::::::::::DE::E:::::::::SG::::::::V::::V::::

consensus       WDILVTDSDTGGARFEITGIDFLD
#oth            ...................11...
rrnAC2477       :::::::::::::::::::VE:::
Hut2983         ::::::::::::::::::::::::