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2 genomes BUD3746 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC2801

 - - -

Hut1220

 - - -

Pairwise sequence scores
Consensus score2245 rrnAC2801 Hut1220
1583rrnAC2801 2155 870
1532Hut1220 870 2082 

309 symbols
consensus       MNQRLLTGAALAVSGVVLAAMQVFHATQQTRIPVAVAVDALPFAALGLALSFAGYWLARD
#oth            111111111111111111111111..11..11....1..11..111..1111..1...11
rrnAC2801       ::::::::::::::::::::::::::V::::::::::::::::V:M:::VTY::V:::::
Hut1220         -----------------------V:::E::DV::::V::GV:::M:::S:::::::::TS

consensus       AAFDGALPRIAAWAAGGTLLFAAVAALLLFSQRVASGSLARASYLTIDGVTVGAIAGTLV
#oth            11111111.1....1...11.1.....1......11.1.1.11.1.1.1.....1..1..
rrnAC2801       T::E::TS:V::::::::VT::::::::::::::T:::::::::::V:L:::::L::V::
Hut1220         :EY:PD::::::::T::::::G:::::M:::::::T:T:Q:VT:M:::::::::::::::

consensus       GLYDARSRHRRRRLAAERDRTEAFARKAADLNNYGRAIAQAPSVDEVAAFCVQAFGSLLG
#oth            .......1111.1.11....1....1....1......1.111..11.1..1.1.11111.
rrnAC2801       ::::::::S:L:E:::::::V::::G::::V::::::::S:::::G::::V:E:::TMT:
Hut1220         :::::::Q:D::::QR:::::::::::::::::::::L::SS::E::G::::::VS::::

consensus       MDQTAYIQLRDDDARALANTVAAVPDDALAEQARAARAQEDDAVRIHRADGATDIGQSAS
#oth            111..11111111111111..11..1.11111.11111.1111.11.111111.111.11
rrnAC2801       :EE::V:::::G::V::::::RT::V:VV::F:Q:V::::QG::IV:DRPFPV::PE:VT
Hut1220         Y:::::VEVGP:GE:IVSS::::::::::RT:::N:-V:H::V:::::::::::S:::::

consensus       DCLSAATLDIGLDGDEDETGVLISVGEDEDSLGEEDQQLLELLASHAGMRLAQLDRQNAD
#oth            111.111.1111111.11.1.111.111.11111..11.....1...111111.1..111
rrnAC2801       ::V:::V::-----:::::T:V:::TT::TTV:::::K:::::V:::SV:M:T::::S::
Hut1220         SG::TV::S:::::T:PL::::VT:::I::::SS::E::::::::::::V:D::S:::DS

consensus       AEGADQSDA
#oth            111111111
rrnAC2801       E:LTG:---
Hut1220         :S:::E:::