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2 genomes BUD3750 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
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rrnAC2995

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Hut2560

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Pairwise sequence scores
Consensus score1555 rrnAC2995 Hut2560
1135rrnAC2995 1481 610
1030Hut2560 610 1359 

209 symbols
consensus       MSTERPSDEGEAATDLNSEGADIEAGSRWSIGNWAVIGVFAGLTLVGIALAAGLLGRAVA
#oth            11111111111.1.111.1111111111..11..1.....111.1..11111.11.11.1
rrnAC2995       --------M:::D:E:S::SE:VL:T::::::::::::::FVF:V::V:M::::F::G:L
Hut2560         :::::::::HS::::S::G::S::D:VE::LL::I:::::::::::::V:ST:V::W:::

consensus       IETDGGDGNGVTIPLAVFLYAGLGALGYIFTKLMHKLDRYDEWADFEHLAEIALRIPAAC
#oth            11.1.1.111..1.11.1...11.....1.....11..1.1..111.111.111.....1
rrnAC2995       T::V::::S:::V::::::::T::::::V:::::TS::E::::::::K::::G::::::W
Hut2560         :P:::S:P:P::::VY:Y::::F:::::::::::::::::T::NQW::VV:M:M::::::

consensus       ILAAGVYLLLGNFGSLAIGSEGLDAARLAAGVAFLVGLYVNVALKALGGLADRILGRRPE
#oth            1......11111...111111111111111..1..........1.1..1....1...1.1
rrnAC2995       L::::::----Q::::::::SS:G:TQ:VT::P::::::::::Y:W:::::::L:::E::
Hut2560         :::::::::::::::V----::V:G::F::::::::::::::::::::S::::::::::-

consensus       RAEWATSQPGQGEADNRRPDSGDSVGGHD
#oth            1111111111111111.1.1111111111
rrnAC2995       :::::::::::::::::::::::::::::
Hut2560         ----------------:Q:Q---------