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2 genomes BUD3766 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC2792

 - - -

Hut0184

 - - -

Pairwise sequence scores
Consensus score1843 rrnAC2792 Hut0184
1268rrnAC2792 1863 646
1221Hut0184 646 1794 

245 symbols
consensus       MIHLSDGDRIRLSTGHEFELPLSLEATIAGAVLPARRAAAEQRLPAGIAPVRMRARQAAM
#oth            1111111.1111....111..1111..1....1..11111.11..1.11..111.11..1
rrnAC2792       :::::::::V:::::::VT:::VT:::V::::::::YDV::SL::D:LT:::VT:::::V
Hut0184         -----MT:S:TV::::T::::V::S:::::::F::D:::V:::::::::::G:::DS:::

consensus       TLLCVRYDRIGDDAIAPYDEFAVLIGATEADERQIPLLPLLRRAIGGYVESLPVTTEPAR
#oth            11.1.1.1.1.11111....11..11.11.11111..11..1.111...11.........
rrnAC2792       V::::E:H::::::M:::::::::::::-:::W:S::V:::T:D:::::W::::::::::
Hut0184         :V:V:::::V:EET:P::::VG::FP:V::GT:T::::S:::::VS::::T:::::::::

consensus       ALGDDIWGYPKLVANIDHHDNGKRREATVRADGDRLASAAIDRPRTLEAREQGENFALRD
#oth            .1.11......1..1.111.1111.11..11..1111111.11.1.111.1111111111
rrnAC2792       ::::E::::::T::::S::::TT:::T::VE::::V:TVS::W:::W:H:::I:SY:V:E
Hut0184         :F:V::::::::::D::VT:E::T:T:::::::ET:L::::Q::P::P::LS:Y::T:K:

consensus       DRLEREPTELRGRLGAAPASSRADVDFGDHERARQLRAIDLGDRAILRLAADCRITIGAG
#oth            1..1.111111.11..1.11.111.11.1.11111.111.1.1.11..1111111.1...
rrnAC2792       G::::TSV:FQ:K:::::L::CI:::P::::::DT::SL:::S:SV::FSLEG:::Y:::
Hut0184         :::L::::K::::V::W::T:::S:S::E:PIG:::G:::V::::::::::::TF:::::

consensus       RPIER
#oth            11111
rrnAC2792       :SV::
Hut0184         E::ID