2 genomes BUD3767 2 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC1641 - - - Hut2638 - - -

Pairwise sequence scores
Consensus score	1963	rrnAC1641	Hut2638
1434	rrnAC1641	1941	786
1315	Hut2638	786	1879

255 symbols
consensus       MCGSMGISAFIDAVEDARRSLTVLNRDEPDPLYRMLRRMFDNDAVAVQANQMDPDAPENA
#oth            111111......1.1111111..1.11111..1...11.1.111.1.111111.11.111
rrnAC1641       ::::VT::::::T:PL:::T:::F:D:::E::V::::::V:SP::E:::GE:S:ES::::
Hut2638         ----::::::::::::REK:V:::::ESV:::::::DG:::::N:::TE::-:::::SDV

consensus       VLLRDADGGELAISQINAIGACLLLVNSDLYVTGTRPLDEVDTPAALAHLDDVPFTVSDK
#oth            .111.11111..1.111111111............11.1..1..1111..11.1...11.
rrnAC1641       :VVK::::T:::V:S:::V:::V:::::::::::::S::::::::::L:::E:::::TG:
Hut2638         :::::KQT:S:::::MDE:SET:::::::::::::V::E::E::EVV:::S::T::::::

consensus       RKMLLIEISRHIESLALQSDDNILHAGFQQLSRIRDERGTARAYRRLADSDTDLHLYGLG
#oth            1.1...11..1....1111.111..11..1...11.....111.11....11.1.1..11
rrnAC1641       :::::::L::Y::::GW:::::T::::::Y::::D:::::R:V:D::::::::::::::P
Hut2638         Q:F:::H::::::::::ET:GG:::SS::::::L:::::::D:::T::::GV:V:V::V:

consensus       DWRPPALADRLSIHAEPRDELRDSWFVVNDGNCDANRKAALLAERIGPNQWRGYWSFEAR
#oth            1111.11111111.11111..11.....111111111111.1..11..111....1.111
rrnAC1641       :-:V:E:SEDPT::T:::::::E::::::T-D:T:DM:GV:::::T::S::::::::G:D
Hut2638         G:E:::F:::::V::GSTP::Q::::::H:::G:E::M:::V::E::::EY::::T::P:

consensus       HVREILAYLRKRYSP
#oth            1.1..11..111.11
rrnAC1641       ::D::S:::::::::
Hut2638         L:::::G::ETQ:V-