2 genomes BUD3769 2 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC0939 - - - Hut2955 - - -

Pairwise sequence scores
Consensus score	4539	rrnAC0939	Hut2955
3497	rrnAC0939	4538	2426
3468	Hut2955	2426	4533

595 symbols
consensus       MSGWRALLRRAKARVRDDLRDDPYLRALLLLAAVISGFWFWHRIPNLATRDEWSRALDAL
#oth            .111.1.11..111.11.1.1....111.1.11.11.......1..1.....1..1..11
rrnAC0939       :::::S:S:::VEQ::S:F:::::::YV:::ST::V::::::::::F:::::Y::L:::M
Hut2955         :VPV::::G::::::L::::T::::P:::V::::L::::::::L::::::::::::::P:

consensus       VAFRSVLADPSFEGLKAGIAWGRAPFGATLYLFALAILPMIAVAALTGNLDAITGIAHIS
#oth            .111..111..1....1.11...1.....1..11..11.111..1...1...1.11111.
rrnAC0939       :VYG:::EE::::::::::E::::::::::::Y::::::VVL::::::D:::F:T::FP:
Hut2955         ::::::V::::Y::::Q:V::::V:::::F:::G::LV::::::V::::::::::TP:::

consensus       WAFGHFEIWAATPAWIWTGSIGLIRLFNVAAALCAVYLTYRIATAIADRNAGRLAALFLS
#oth            .1...111.111.1.1..111111..1..11.111......1111.11.11...1.11.1
rrnAC0939       :E:::Y:V:::::E::::W:LVS:::T::V:::::::::::LGV::EG::::::S:VV::
Hut2955         ::::::P::NEV:::F:::Y:::V::::::F:VGS:::::::::T::::ST::::::::T

consensus       LTFGFLTIAHEAGEDMPALFFLLLALYLLIRFVRSDDGTLFLAASAAGGVAIAFKLTAAP
#oth            ........11.1.......1.1.1.....111.1111111.1....1....1.....1.1
rrnAC0939       ::::::::SK:::::::::V:V:::::::V:Y:QT:::::::::::::::::::::::::
Hut2955         :::::::::::G:::::::::::V::::::L::::GETWT:Y::::V::::M:::::M:V

consensus       VIALIALAHVLRARAADAPLPRSLYRPRLIGIGAALGLAAIVLGLPTALVAAFDPFIERI
#oth            ..1..11.1.....111.11111....1.111..11.111..1.1..1..1111.111.1
rrnAC0939       ::L::GV:F:::::::::::TET::::K:LLS::LF:F:M::::F::::::GPE:::::V
Hut2955         ::::::::::::::ERE:-W::::::::::::::::::L:::V::::T::G::::VLS::

consensus       GGGSISRMGNPHGPDAPMWWWFARGYFNALGLPLLTAAAAGLVAALARIRDRRRANHGTL
#oth            1.1.1..111.1..1..1....1....11.....11111111..1111111.11.11..1
rrnAC0939       F:::T:::SH:T::::::::::L::::S::::::V:::::SV::TV:T::::GS:F:::V
Hut2955         ::H::::P::::::T::T::::::::::G::::::VGSVG::::::S:V-G:::::T:::

consensus       LILAGIGAFAALFSQWHDFRVHHLIPTFPLIAILVAGRLVELRDRRESLARPLMAALIVS
#oth            .1.1111111.1111.........1.....1.1..111.....1.1111..11111.1.1
rrnAC0939       :::T:LT:YI:M::::::::::::::::::::L::G:::::::E:SS:::::V::V:L:T
Hut2955         :V::T::G::::YVP:::::::::L:::::L:::::TW:::::::::TV::V:TV:::::

consensus       SAVYAGIGTAQFADMPRDQAAAWLDDRSRDNDTIETYRWHIQDTALPHGANARHKAGQDS
#oth            11....1.1.11.11...1.1...1111111111....1.1....1..11111111.111
rrnAC0939       T::::::::::::S::::E:T:::EKN:E:G:VV::::V::::::V::SLT:::V:::::
Hut2955         :G::::V:V:GY::T::::::::::::V:E:E::::::::F::::::::::VTY:E:---

consensus       EAEEAMACPRYIQLGYRDLLYLKDDTYLRNGDARAAYIRNLLNEESNYRIVAEFGERPPA
#oth            111.11...1..111....1..111..1..111111.1.1..11.11.11.....1...1
rrnAC0939       :::::::::::::V:::::::::E:::Y:::::Q:T:L:::::::Y:::::::::::::N
Hut2955         ---:FT:::E::M:T::::V::-:E:::::SPR:Q::::G::DG::G:ET:::::S::::

consensus       FFPQRPTPGSLTDLLRLGIVPQTDQHADEQELAANQFTLILQRDGECDADRDPPF
#oth            11........11...11.1..11..1......11..1.1..111....11.1...
rrnAC0939       :V::::::::F:::::::V::H:::F::::::::::Y::::E::::::TS:H:::
Hut2955         Y::::::::::V:::PY:::::V:::::::::RP::::V:::ST:::::::::::