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2 genomes BUD3770 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC2393

 - - -

Hut2404

 - - -

Pairwise sequence scores
Consensus score3204 rrnAC2393 Hut2404
1027rrnAC2393 1390 631
2808Hut2404 631 3197 

429 symbols
consensus       MMRDNAALSFNANQEDAQADHVIQLGEWESSEERIELSEMAEDMLRNEVNADEEKEGDRI
#oth            11111111.1111111111.11.1.1.1.1..111...111111.11...11111111.1
rrnAC2393       :SS:D::V:PI:GLV:::G::::E:T:::T::::V:::PSD::T::T:::::KK----:L
Hut2404         -::S:MS::::R:::EFE::--:::::Y::::P-:::::::VS::E::::SG::::::::

consensus       ELQFNRDGRAILRARQFVGVVALRDGPTIQIRPKAAGNNLLYLLRYAQNTSATTIEQQAG
#oth            11111.1.1.11111.1....1.1.....111.....1......1..11111..1.1.11
rrnAC2393       :Y::D:E:::TF:::::::::::P:::::::S:::::::::::::::::V:P::::::T:
Hut2404         K:HY::::E:::TST:Y::::S:::::::EV::::::T::::::Q::HD:T:::F:S::P

consensus       LQAGDSFLDALAALFNAELRRILRRGLHSDYRRTDAEEKQLRGRLDIQRQLQRQGPVPTA
#oth            111.11.1..11..111..11.11...111.111111.11......11......1....1
rrnAC2393       :GQ::::V::::::::Q::QE::::::::E:QTVSS::::::::::V::::::::::::K
Hut2404         Y:::HT::::FG::YE::::::VD:::YT:::::::T:SH:::::::H::::::P:::::

consensus       FECTYDELTHDILANRAILHATTVLLGAVSDRSITQSLRQHQQLLRRQVSLTPVTIQDIE
#oth            .....1111111111111111111111111111111111111111111111111111111
rrnAC2393       :::::-------------------------------------------------------
Hut2404         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       RIELNRLADHYEDILRLTKLVIRNSFVSELQAGSSAAFAMLVNMASIFENAVERACKEVL
#oth            11111111111111111111111111111111111111111111111.111111111111
rrnAC2393       --------------------------------------------::V:S-----------
Hut2404         ::::::::::::::::::::::::::::::::::::::::::::NT::::::::::::::

consensus       SEREDWEVKFQDTSQNLITGGKHTVTLQPDITIYDPENTVSLVADAKWKNERPKNADFYQ
#oth            111111111111111111111111111111111111111111111111111111111111
rrnAC2393       ------------------------------------------------------------
Hut2404         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       MTSYMLANNVPGILFYPDCGGLNESRSTVTGGFPLWLSELPTAVQVNSYEDFVSAFESET
#oth            111111111111111111111111111111111111111111111111111111111111
rrnAC2393       ------------------------------------------------------------
Hut2404         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       ADAIFGMVD
#oth            111111111
rrnAC2393       ---------
Hut2404         :::::::::