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2 genomes BUD3912 4 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC2904

rrnAC3259

 - - - -

hla0057

hla0714

 - -

Pairwise sequence scores
Consensus score2273 hla0057 rrnAC2904 rrnAC3259 hla0714
1325hla0057 2313 1165 892 992
1620rrnAC2904 1165 2330 1186 1240
1619rrnAC3259 892 1186 2266 1435
1745hla0714 992 1240 1435 2422 

322 symbols
consensus       -MATVLVTGGRGASGRWIVDRLA-GDHEVVVVDRRHPGDEGDPRENVDFKAADLTDAGEV
#oth            123111...11.31.1.11.11111312.121.222.2323312231212.2.1113112
hla0057         ::::I::::SC:GV:S:T::HF:DAG::::G::L:T:P---GT:::::::::::::Y::T
rrnAC2904       MTD::V::::::R:::::C:H::::EYH::C:::D:::W:IPT::YI::::V:V:EGV::
rrnAC3259       :-MN:V::::::S:::::::::V::P:D:T:L:::L:D:::H:A--:EYQ:L::::::G:
hla0714         ::E:::::::::::::::::::::::Y::::::YE:::PGV::TSH:S:R::::A:R::A

consensus       RDLIEAVDPDAVVHWAAIPVAERHAGGRVFENNVHAAYNVLDAAGRAGARIVQASSDGAY
#oth            31233121..1...1..1.2113.11311.21.13112..11...111.11111..111.
hla0057         KQ::::AG::::::L::::NP:S:::S:::::::VST::::::::AV::::AW:::ESL:
rrnAC2904       :::FSE:::::::::::L:AP:::::T:::DT::S:T:::I::::::::DV:W:::ES::
rrnAC3259       F:TLT:I::::::::::::::GN:P:VDL:Q::TL::H:::S::::V::DV::G::::::
hla0714         L:VVH:::::V::::::::::GT:PD:::::T:::::K:::::::::D::::::::::::

consensus       GFFFAEETPLPDELPIDEDHPTAPEDPYGLSKVVGEEIAKAVARRDGVSAASIRPSWIQY
#oth            .22.112112.121..1.31123...1..1...22.1212311..2.1211.1.1..112
hla0057         :TV:S:ADW:::AF::::ET::E::::::::::::::::AR::::Y::::V:L:A::VT:
rrnAC2904       :LA::::::::AY:::::S::::::::::T:::A:::V::M:T:::::DV::::::::::
rrnAC3259       :::::::::V::::::T:K:ARR:::D:::::::T:::G:TI:::::I:V:::::::::I
hla0714         :::::DP::F::::::T::::LQ::::::::::TA:AA:G:::::E::P:V::::::::F

consensus       PGEYACRS--DGYVNDLAAGAGNCWSYVDVRDVADAVAAALDAD-----IAG--------
#oth            ..1131.21112223111111..2...1.1..1121.1..121.1111122.11111111
hla0057         ::SEKT:TARE:FDPAT:DLS:::::::::::LIA::E::I:P:SSKPP:E:::::::::
rrnAC2904       ::::N::-:::VATG:::D:::::::::::::::T:::::::::::::::G:::::::::
rrnAC3259       ::::P:::::ED::D::::::::Y:::::::::::L:E:::T:::::::V::::::::::
hla0714         :::::::::::::::::D:::::F:::I:A:::::L:::::-:::::::T::SDPTVAPG

consensus       -HEAFNCVAADNALGRPLAALIREAYGDLPADCAVDG-------DAAAYSTAKAQRLLGW
#oth            1..11112111.21..1122131232.21.11.32111111111.3312221..32111.
hla0057         ::::VLVT::E:F:::DT::T:EAVH:::::::DIE:::::::::EVVFDCS::K::F::
rrnAC2904       ::::::VA::E:YV:::T:::VE:QW:::::E:KL:D::::::::QS:L::::::G::N:
rrnAC3259       :::T::::GP::::::::VE:M:DH::RV:D::T:E::::::::::::::::::TER:::
hla0714         T:::V:::::::::::::LD:L:::::EV:D::::::SALAEGD:RG::AI:::E::F::

consensus       EPQRSWREAADADVAAPTLL--
#oth            1.311..1.2121.33.12322
hla0057         ::EHP::::E::E:TG:GF:::
rrnAC2904       :::H:::D:V:::::::::TGK
rrnAC3259       ::T::::::::V::DV::V-::
hla0714         T:S:::::::NE::SE:::FER