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2 genomes BUD3916 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
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rrnAC2848

 - - - -

hla1067

 - -

Pairwise sequence scores
Consensus score2974 rrnAC2848 hla1067
1725rrnAC2848 2331 1220
2469hla1067 1220 2872 

392 symbols
consensus       MTDRSRTTDDDRSQDTSTDGMRRRRFIALGAGVGAGLLAGCAGDGDAGGSDGSDGDGTSD
#oth            111111111111111111111...1.1.1....11111...1.111111...11.111..
rrnAC2848       --------------------::::::::T:::::V::F:::S:SS:S:::::TS::::::
hla1067         ::::::::::::::::::::F:::E:V::::::S:TM::::::::G:TS::::::---::

consensus       GGETDEDAMTNDGGLTGNFRLLISDAPAAIGDFDQLNVSLDRARIFEANEGGDDDEEADD
#oth            .11.111111111111.1.......1..1.....1.1.1111....1.111..1111111
rrnAC2848       ::P:::::::::::TV:T:::::::Q::::::::S:D::FS:::::H:K--::EE-----
hla1067         :S::----------::::::::::::::D:::::::::T::E::::::::::::::::::

consensus       DDEADDAEETDEEEEADADADDEDDESNQTGNETAEDDPTNGAADEADDADTEDEDDAED
#oth            11.1..11..111.111.1.111111111..1..1.11111111111..1.1...11.11
rrnAC2848       T::G:::T::EST:T:T:E:---------::T::::------:TET:::D:::::TE::G
hla1067         :E::::E::::::::D::::::::::::::::::E:::::::T:::E::::V::::::G:

consensus       DDEEADDDDEEADDDDESDRGFEVRDLDGATVDLTQVIEDDAIAVLDGEIEAGRYEKIEL
#oth            1.....11.11111111111..1.11.........1.11.1..1.1...11..1.1....
rrnAC2848       E:::::GG:S----------:::::::::::::::E:VG:K::G:::::L:::::S::::
hla1067         ::::::::::::::::::::::T:VE:::::::::::::::::::F::::S::S::::::

consensus       SAEDIDGIVDGEEVDVKIPSEKLQITNDFEVTADEPVDFVFDINVVKRGPNNGYNLQPVI
#oth            111111.1....1....1......1.11...111.1.1.........1.1.1..1.1...
rrnAC2848       Y::SV::V::::S:::::::::::L:KP:::V:G:S:::::::::::K:-:G::::L:::
hla1067         :VT::E:::::::::::L::::::::::::::P::::S::::::::::::::::I:::::

consensus       SESGVAGRDIDVAEIDNDGADGDDEDGDEADDANEDDDDSDDDDDSDAEDDDIDDSDRDS
#oth            .1.....1.1..1.111..11111111.11..111.1..11..1111111111.11.1.1
rrnAC2848       :::::::K:V::::VG::::E------:G::::EG:S::T:::EETE::TTE::ET:::-
hla1067         :G::::::::::N:::E::D:::::::::G::D:::::::E::::::DS:::S::::D::

consensus       GESDGSTTGGSETDDDQRGNENEAAEGNVSES
#oth            1111111111.1.11111.1.111.1111111
rrnAC2848       ----------:V:ES::::::TT:::------
hla1067         :::::::::::::::GSS:T:::T:T::::::