2 genomes BUD3925 2 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC3347 - - - - hla1821 - -

Pairwise sequence scores
Consensus score	2660	rrnAC3347	hla1821
1789	rrnAC3347	2642	927
1798	hla1821	927	2653

351 symbols
consensus       MAEQAGHALPAAFDALNIGIALHDPDSNAILDANARLAEIFGYSADELRERGIGDYTANS
#oth            .1111.11..111.1.11..1.1..1111...1.1..1.11...111..111111...11
rrnAC3347       ::S:T:::::::Y:::::::::Y::::G::::G:E:::::::::VS:::::S:SE::::T
hla1821         :R:P::TR::VI::D:DV::N::::TT:E::::::::E:LY:::::V::TM:V:::::P:

consensus       FKHSQADARRRIQRAAAGEPRQFHWRIERANGELRWARIHLSERCIDGRRCVCAEIRDIT
#oth            111.11111111.11.1.1111.1.1.1.11...1.1.....11111.111.11.11.1.
rrnAC3347       :V::V::F:S:L:DS:::GS:::T:::K::D:::I:::::::::VVS::TY:::::::::
hla1821         T:F::DE:N:L:::::D:::QT:::Q:::S::::::V:::::ST::::D:::IS:VQ:V:

consensus       EYRARERRERLLSRIIRHNLRNEANVIAGNAARIRAAAEDEAIRDAIETIRDRTENLGNI
#oth            ..11111.11..1..1......111..1.111.1111111.1111111.11111111111
rrnAC3347       ::FETHH::E::W::L::::::::T:::::T:::T:S:GT::V:::SK:::S:V:::T::
hla1821         ::::::::L:::::::::::::KT:::M:Y:D:V:Q:V:::T:EQE:::VL:I:TEV:GL

consensus       SDSVKQIERAAARDATDRSRCDLRARARGLVADAREDHPNAEISVIARAELWVDANDAIR
#oth            11......1111111.11111111111.11.1111111.11111.111111..1111111
rrnAC3347       VE::::::::V::PG::YT::HVTR:V::V:NTILT:Y:TS::T:TE:::::::S:::FT
hla1821         ::::::::EI:EP:::E::QT::::V::S:::::::T::::SF::::PESV::I:DKG::

consensus       YAIEHAIRNAIEHNDAETPSVEVSVEPGDRDGRGEIRIADDNPPIPDTEIEALKDDTQAS
#oth            ..11..11..11.1111....1...111111.1111111.11.......111.1111111
rrnAC3347       ::LT:::E:::I:SE:V::::::::G:SPNT::V::C:R:S:::::::::S::F:P:::T
hla1821         ::::::V:::V::::R:::::T::::S:::::H:VV:V:::G:::::::V:V::Q:VET:

consensus       ETAHGTGVGLFVILWCIESLGGELRFERNGDRGNAVFISLPKAADPPDDDQ
#oth            1.1.......1.11..1.......1..11111..1.111..1.11..1111
rrnAC3347       ::::::::::::MK::::::::::::::S::-:::::FY::-:R:::::Q:
hla1821         S:Y:::::::W:::::V:::::::V::E:TP:::V:S:::::::E::SG:E