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2 genomes BUD3927 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC0134

 - - - -

hla1716

 - -

Pairwise sequence scores
Consensus score4377 rrnAC0134 hla1716
3277rrnAC0134 4136 2470
3570hla1716 2470 4380 

585 symbols
consensus       MDTDESQSGTDPSAVDAMRVAEAVVDRLLARGIDTAFGIPGKQSLPLNRAIGNRDAIRFV
#oth            1111111111111111111.11....11111...11.......1....1.1.1..11...
rrnAC0134       -----------------:::SL::::::V:N::::V::::::::::::E::::::D::::
hla1716         :::::::::::::::::PT:::::::CM:D::::V::::::::T::::::L:E:::-:::

consensus       VARHETAVSHQAWGYAETSDPGAIAASIVVPGPGDMNAMNGLKNALNDCTPLLHLAIETE
#oth            ........1..........11.11.111.....................1..1.1.1...
rrnAC0134       :::::::::::::::::::--:E::STV::::::::::::::::::::::::V:F:::::
hla1716         ::::::::T::::::::::::::M:::::::::::::::::::::::::V::::::V:::

consensus       RALRGGDAIHETPPDTYDNVVKENILLDNPAGAAAAIARAIRIAREHPQGPVRVGIPKNY
#oth            111....1......1...1.....1.111.111111111.111.111.1......1..11
rrnAC0134       P::::::::::::::::::::::::::K::ETT::T:D::VQ::QTP:K::::::L::::
hla1716         :EV::::G::::::E:::T:::::V:V:S::::VP:V:E:::V:::::::::::::::DV

consensus       LASRMDQPAAGAREPAAPPDNTVPADAVDRAADHLAAAERPLILAGGGVRAAGASAALRA
#oth            .111111.11.111.1..11111.111.11..11.11.11.1........11.1111..1
rrnAC0134       :--Q::V:L:::ST:S::SS::::EQE:ST::E::L:::::::::::::::S:GT::::S
hla1716         ::::TP:::I:D::::::::P--::::::::::L::G:GS:V::::::::R::::DS:::

consensus       IAERLDAPVVTTYKGKGTLPEDHDLSAGVLAGGASPELRDCLADADAGLAVGSDLDAHAT
#oth            1................11..1.1......1.11.1..1.1...1.11.1.......11.
rrnAC0134       L::::::::::::::::VF:::::::::::::S:::::L:::::S::V::::::::::G:
hla1716         :::::::::::::::::::::T:P::::::C::S:T::::L:::::R::V:::::::V::

consensus       AGWSVELPDSLIQVTIDADDIGFGYDADLGILADAARALQAIENRIADEEEEMLASEAAD
#oth            11...1..11..1..1.1..1.1..1111..1...11111.111.1111111111111.1
rrnAC0134       R:::::::ET::::::::::L:T:::PTV:::::::D:MT:::::::----------:::
hla1716         :S:::S::::::H::L:G:::::::E:::::V:::D:F:::LGD:LG::::::::::P:G

consensus       SAPAPESDGAARADAVRDADARRIAALADERSANDPLRSVEVLRELRDALPADAITAADA
#oth            1.111111..1..1...1.111.111.1.111111..1..1..111.1...11.1111..
rrnAC0134       T:::SKT:::E::Q:::::T::::EP:V:---SEP::T::H::QV::::::S:::::V::
hla1716         ::SH:::P:::::::::S::RE:F:::::::::::::::::::::V:E::::E:VVT:::

consensus       GGFRLWALNSFAAAGPRRYVNPGSWATMGTGLPSAIGAQLANPDRDVVALTGDGGLMMCV
#oth            ....1.1.11.1.1..11....................1.....11..............
rrnAC0134       ::::V::::T:::Y:::S::::::::::::::::::::::::::TP::::::::::::::
hla1716         ::::::T:V::P::::S:::::::::::::::::::::K:::::::::::::::::::::

consensus       HELHTAAAENIDITVVALNNDDYAIISEEAGRSYDLDAQAYGWARTAIDLGAVAAGMGMR
#oth            .....11..1111...111...........1.....111....11.1..111..1...11
rrnAC0134       ::::::V:::LP::::V::::::::::::::::::::H:::::D::P::F:T:::::::E
hla1716         :::::L:::G::V::::FT:::::::::::S:::::P:G:::::E:::::V:::S:::V:

consensus       AERADDRDAIREALHEALAHDAPALIEVATDPAEPQASEWMTRER
#oth            .11111111111.111.111.1.1.1..1...1........1..1
rrnAC0134       :TQ::TPSE::T:V:::VQT:::T:V::R::::::::::::-::-
hla1716         :::VT::::VG:::TS:::::G::::::::::D::::::::::::