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2 genomes BUD3931 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
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rrnAC3464

 - - - -

hla2188

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Pairwise sequence scores
Consensus score2306 rrnAC3464 hla2188
1689rrnAC3464 2241 878
1495hla2188 878 2262 

307 symbols
consensus       MIMQIADRRCILNPQSGDGEHADDVERRADARGFAVERSQAAGDAVELGREAGRAEASEI
#oth            1111111111.1..1..1.1...1.1111111.11.11111..1..1.11..11.11.11
rrnAC3464       :::::GS:::::::V::::::::Y:P:LME::::E:YET::::::::::::::::::::V
hla2188         ----M::TVI:Y:::::G:S::::::D:::LS:Y:::::EH::E::T:TQ::IE:GY:T:

consensus       AACGGDGTVNEVVRGINRADALDDVTLGIIPAGTANNLAGNIGITDIQHAFEAADDGARR
#oth            111..........1.111.111.1..1111.1..1.11.11..1..11111111.1.11.
rrnAC3464       :V:::::::::::::L:D:GH::S:::SV:::::::L::::::V:::::GV:I::I::T:
hla2188         V:G::::::::::Q::D::::F::::F::L:L::G::F:KQ:::::LET::I:L:::V::

consensus       PIDIGMADDRPFLNSCIAGLPADASSGTPGALKERIGGLAFLLTGAREALRFDGLDITIA
#oth            11.1.1.111..11..1...1.11111.1.1..1.1.1..11..1111111.11.11..1
rrnAC3464       :V:V:V::EE:::V:::::::::::VS:::D::::F:T::::::::Q:::::::::::::
hla2188         T::::::T::::V:::V:::T:ESV:::S::::S::::::YV::TL:TVTD:EP:QL::D

consensus       AEGEDGDFPTWSGEALCLLVGNARQFAADGGTQANMEDGLLDVAIVEDMPAGNLMADAIG
#oth            1111..111......1.11...1.1.1.1.11........11....111.111.111.11
rrnAC3464       :V::::P:-::::::T::::::::K:V:E::-:::::::::::::::Q::T:::V:E:::
hla2188         N:MS:::T:::::::::VV:::G:::::::T:::::::::FE::::T:V::ID::S::VL

consensus       QRLLAQDSDGIDRFRAAEIDIAGHGKDPIRFSRDGELIEQRDLSLSVRENRLRLRVGEGY
#oth            1..111.11111111.1111.1..111111..1...111111.1.1..111.1.1..1..
rrnAC3464       :::::L:T::VTHV::D::T::::::E-LT:::::::STHET:::::::TT:T::::P::
hla2188         E::FG:::PH::::Q::SV::R::SS::::::V:::T::::::V:T::P:::::V:::::

consensus       DPDPMDT
#oth            1.1.111
rrnAC3464       E:::V--
hla2188         ::S::::