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2 genomes BUD4060 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
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rrnAC1341

 - - - - -

NP0164A

 -

Pairwise sequence scores
Consensus score4699 rrnAC1341 NP0164A
3852rrnAC1341 4670 2427
3274NP0164A 2427 4275 

601 symbols
consensus       MSVESTVKSGGEDGKFCRLGCGDGGSTERRNSHPDDRYAMVWHVMPDEEGYDQAHAQFSW
#oth            111111111111111111111111111111111111111...1.1111.1.11.111.1.
rrnAC1341       ::::::::::::::::::::::::::::::::::::::::::T::::F::::E::E::::
NP0164A         ---------------------------------------:::::TVP::S:E::T:E:T:

consensus       DIPNDYNAAYDLLQKHEDADRPALEQAYPDGRREQYSFRDLDDESDRLAAALADLGVEAG
#oth            .1.11..1.1.111...111.1..1......1..1.1.11..11.....11..1...11.
rrnAC1341       :L:SS::P:V:F::::::PG:V:::::::::Q::::T::E::EL::::::G::S::::::
NP0164A         ::::::::::::VG:::H::::::F:::::::::E:::G::::::::::N:::::::GR:

consensus       DRVGVVLPQKPANPITHLANWKLGAVSMPLSVLFGPDALQYRLDDAEATVAVIDRDSRDD
#oth            ......1..1.1.......1.......1..1....1.1.......11.....1.111111
rrnAC1341       ::::::V::::Q:::::::::::::::V::T::::T::::::::::G:::::::PTV:::
NP0164A         :::::::::V:::::::::C:::::::::::::::::G:::::::S::::::V::::YET

consensus       IDAIRERCAGLEHVLEIDWAGAAHAEDSHAFGDLLAAADNSDIEPYDSSPDTDAAILYTS
#oth            1.1...1.11....1.11111111111111.1111..111111..1.11.1.111.1...
rrnAC1341       ::::::D:PT:::::::E--TD:P:G:V:::::M:::PE:T:::::::T::::T::::::
NP0164A         V:G:::::::::::V:V:::::G:H:G:TT:SG:V::::S:-F::V:T::E:P:I:M:::

consensus       GSTGPPKGARHSHALWLGRAAAAKNFFDQDLGPDATFWTPADWAWGAALGDLLFAAWHHG
#oth            ........11.1.11.1.111.1111.1111111.11........11...111.11..1.
rrnAC1341       ::::::::V::::::::::::::Y:::::G::::::V:::::::::::::GT:::T::::
NP0164A         :::::::::L:T:SV:V:HCP:F:MY:EL:M-SE:V:::::::::IG:::::V:P:::Y:

consensus       RPIVGYPAGEFDAEAAFDLLAEFDITRSFLPATAIRMLMDIEDPTDSYDLAIEAIASGGE
#oth            111....111.11.1..1.11...1.11.1.1..1....1..11.11...11.1111...
rrnAC1341       GT::::::SG:E::::::::S::::::::M::::L::::::::::TT::::::TF:V:::
NP0164A         ::V::::M::::P:L::E:S::::V:ST:::P:::::::G::--::::::SL:::C::::

consensus       PLTPEILDWAAAELDGVAINELYGQTEANLLVANNQNWFDAQAGSMGKPLPGHDLAILDP
#oth            1..1..11.11111.1.11..1.....1..1.1.111..11.11.....1..111.11..
rrnAC1341       S:::::V::V:ETF:S:T:::F:::::L::V::::S::::T:PS::::::::Y:::::::
NP0164A         :::S:::E::E:::::::V:::::::::::::C:C:S::P:::::::::V:::EV:VV::

consensus       DAADRGVAAPLATGELGQIAVRRHDRPVFFDEYWNQPEKTAAKEVDGWHLTGDLARRDAD
#oth            .11111111.11...1.1...111.11.1.1....1.....111.1..11.....11.1.
rrnAC1341       :::::::::::S:::::E::::P:::S::::::::M::::::::::::FV::::::Q:::
NP0164A         :DG-----T:V::::V:::::K:T:D::V:E::::::::::SVT:G:::::::::E::E:

consensus       GYIWFKSRDDDIIITSGYRVGPGEVEEAILEHPDAEQAGVIGVPDDTRGEIIKAFCQASA
#oth            ..1.....1..1..........1...1.......11....1....1........111111
rrnAC1341       ::V:::::K::V::::::::::M:::S::::::::V::::::::::::::::::YVE:::
NP0164A         ::::::::::::::::::::::::::::::::::I:::::V::::E:::::::::::PVE

consensus       DAAADDGLRSEIRSIVRENLAEHEYPREIEFADALPQTTSGKIRRKELRAWNADDSAGEE
#oth            1111111..1.11.1.1.1..11.....11.1.1..1..1.....1..111111111111
rrnAC1341       ::P:HET:::::::::::H:::Y:::::::::::::::::::::::::Q::::::::::S
NP0164A         GV:G:::::T:VQ:L:K::::K::::::LT:V:E::T::T:::::T:::---------K:

consensus       P
#oth            .
rrnAC1341       :
NP0164A         :