2 genomes BUD4061 2 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnB0309 - - - - - NP3420A -

Pairwise sequence scores
Consensus score	2873	rrnB0309	NP3420A
2628	rrnB0309	2880	2338
2583	NP3420A	2338	2894

389 symbols
consensus       MPQPVIAAVGASPLGRTDLPGRDLFSLAIAEAFDELPDPAEIADAVYVGNQSESYEHQIM
#oth            ..1..1.1..1..1.1..........1.1.....1.....1111.........1......
rrnB0309        ::E::::S::::::::::::::::::V:L:::::::::::::VE::::::::::::::::
NP3420A         :::::L::::S::V:Q::::::::::::::::::G:::::SL:::::::::::T::::::

consensus       QGTLLAEWAGLRNVPAERVEGCAAAGALALRHAVKDVRNGEHEAVLACGVEKMTAAGTGG
#oth            1...........1..............................1..........11..1.
rrnB0309        H:::::::::::H:::::::::::::::::::::::::::::::::::::::::S:::S:
NP3420A         :::::::::::::::::::::::::::::::::::::::::::G:::::::::::G::::

consensus       ATDALSAAFDRAIEQRSGITAPSQYALLAQRYLHETDATERDLARIAVKNHANAAANPRA
#oth            ..................1.........1....1......1...1......1...1....
rrnB0309        ::::::::::::::::::::::::::::G::::Y::::::::::E::::::::::R::::
NP3420A         ::::::::::::::::::V:::::::::::::::::::::E::::::::::R::::::::

consensus       QFPEEIDLAAAIESDPVAPPLKLYDCAPVGDGAAAVLVTTAERAAELDAPQVAIAGSGAA
#oth            ..111.111111..1...................1.....1.1.....1.1.111.1..1
rrnB0309        :::K:::V:TVL::::::::::::::::::::::::::::::L:::::Q:::RV:::::S
NP3420A         ::S:P:E:E:::::P:::::::::::::::::::V:::::E:::::::::S:::G:T:::

consensus       ANNIAVAERDMTDIAGARIAAETAYEEAGIDADAVDIAEVHDAFTVCEALLAEAAGFAPA
#oth            ..................1.1........11111............1.......1....1
rrnB0309        ::::::::::::::::::V:T:::::::::::T:::::::::::::::::::::::::::
NP3420A         :::::::::::::::::::::::::::::LTP:D::::::::::::S:::::::V::::K

consensus       GTGYQSYRPPAERADGWTDVQLSPSGGLKARGHPIGATGLLQAIEAYEQLTGQAGNRAPE
#oth            .......1..1.........1..1...................1........1.11.111
rrnB0309        :::::::L:::::::::::::::::::::::::::::::::::L::::::::G::D::V:
NP3420A         ::::::::::S:::::::::S::T::::::::::::::::::::::::::::::P::G:P

consensus       AAETALLLNEGGVADAVTVAHVLTAAEAR
#oth            11...........1.....1....11111
rrnB0309        G::::::::::::G:::::S::::T:::P
NP3420A         :P:::::::::::::::::::::::GGG: