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2 genomes BUD4098 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
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rrnAC1372

 - - - - -

NP4384A

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Pairwise sequence scores
Consensus score3759 rrnAC1372 NP4384A
2939rrnAC1372 3638 1969
2789NP4384A 1969 3511 

484 symbols
consensus       MRMLNRRPLARALFVALGMALLLIGGPIVSTAGAVDGGPSGEAAADDLDEDAQDTAQTSN
#oth            11111.1111.11..11.11.1.11.111111...1111111.11.1111111111.111
rrnAC1372       ::YMS:Q:::::V::-V::S:::::::::::V:::::::::::VS:T:::T::Q::::::
NP4384A         --:::::---:Q::::::V::M:VL:-----::::-------:::::VES:TG:VS:V-Q

consensus       QMDNETSDLPVEPPTEQPHPGYEEIRQENDTEAKIELGEQLFLDPRISDTGSISCNTCHN
#oth            .11...1........1111.1..11.111...1.....11..1...1.1..1........
rrnAC1372       :SS::::::::::::S::L:S:::V:KP::::::::::KK::F:::L:::::::::::::
NP4384A         ::::::T:::::::::VS:::::Y::::G:::E:::::::::::::::E::T::::::::

consensus       VMEGGDDSRPTARGVHGQTGPRASPTVWNAGFHHTQFWDGRADTLAAQAEGPITADVEMG
#oth            ......1..1111........11......11.11...........11..1..11.1....
rrnAC1372       ::::::G::TVG::::::::::N:::::::V:MS:::::::::::E:::K:::::G::::
NP4384A         ::::::::::::M::::::::V:::::::S::::::::::::::::E:::::LV::::::

consensus       MPDHEAALDRIRNNEGYVELYEDVYGDEAESTDPDDLITLNRTVDAIAAYERTLITPNSP
#oth            ..11...111..111....1..1...1.1111111.11..11............1....1
rrnAC1372       ::TS:::MEK::::::::::::::::G:-------:PV:::N:::::::::::::::::S
NP4384A         ::::::::::::SVP::::S::E:::::::::::::::::E:::::::::::::V:::::

consensus       YDRYVRGDEDALTERQLNGMETFQELGCQGCHSGPAFNGPQWQEPENGNGYYQKHGTFRG
#oth            ..1..1........1..1.....1.....1.....1.1.1..111.1.1.1..1111111
rrnAC1372       :::::::::::::::::::::::K:::::::::::::::::::M-:::::::::L:VYQ:
NP4384A         ::Q::E::::::::Q::D:::::::::::S:::::M:S:-::E:::S:E:V::P:P:::-

consensus       ENEQCDQYIDRYNLMANPGRAGVTDDAADEHLFKVPTLRNVEHTAPYMHNGQVRTLENAI
#oth            1.1..11.111.1.1111..1...1.11..111..............1.1...1...1.1
rrnAC1372       S:P:::::::::::Y:DS::::::G:SS:::M:::::::::::::::F:::::::::::T
NP4384A         :::::QE:VEE:G::D::::M:::::::::F:Y::::::::::::::::T:::E:::D::

consensus       RVMAACQLDQNISDQQAENIHAFLTSLTGQYPDQQMPRIPNRSGGEPMIPEDAGDAEAED
#oth            1...1.111111..111.111..1.....1..1.1...1.11..1.1.1.1..1.1111.
rrnAC1372       K:::S::VG::::::::::VT::M::::::::E:::::::S:::::::L:::::::S:P:
NP4384A         ::::::S::EEV::EEV:D::::::::::E::::E:::L::P::-:S:::M::-:T:F::

consensus       MDDAASVGTPAEEAAADQEADIQQAGADDEESDDSPGFSAAAAMLAAALLIALAAIAYAR
#oth            11111111111.1111111111111.111111111111111.111.1..11.11111.11
rrnAC1372       T:::::::::::T:::Q:T:EP::::VSGGS::G:SPT::::F:M::::::::L:V:::Q
NP4384A         :E---------::PEE:M:N::EEN::::::VE:T:::TIG::V::L::VL:T:L:G:N:

consensus       RKRQ
#oth            .111
rrnAC1372       :::-
NP4384A         :TE: