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2 genomes BUD4109 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
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rrnAC1333

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NP4960A

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Pairwise sequence scores
Consensus score1817 rrnAC1333 NP4960A
1400rrnAC1333 1744 834
1251NP4960A 834 1622 

227 symbols
consensus       MSTNNEVMHDGVMSSNDDARIIPNWEACIDCGACEVACQRTWDLPRDENRIEIAALEEGQ
#oth            ...111111111111111..11.11.1.....1.1.1.1....1.1111..1111111.1
rrnAC1333       :::G::::::::::TGE::::F:DV:::::::G:V:S:K::::V::::Q::S::TML:::
NP4960A         ::::Q---------:::T::V:::::S::::::::::::::::::PET::::VV:::H:T

consensus       EAASGLNASSGQAIGQGESPDEAAKPMQCYNCANAPCVDVCPTDALIFRDNGFVRVRDDL
#oth            .11111111111111111111.111.....1.11....1.....1.11111.1...11..
rrnAC1333       ::::::::::::::::::::G:T:V:::::H:S:::::S:::::S::SKE::::::::::
NP4960A         :-------------------:::Q:::::::::E::::::::::::L:::D:T:::SG::

consensus       CIGCQYCGSACPFGAPQFPDADVPEADEANLLGARGNGLMDKCTMCEERQDEDLEPACAE
#oth            ....1..111.......1..111111111.11.11..11.....1..1..11111...11
rrnAC1333       :::::::L::::::::::::E:---SGV:::V:SG::--::::::::::::VGKG:::::
NP4960A         ::::H:::VG:::::::Y:::E::::::M:P:::::::::::::T::P::E:::::::SS

consensus       ECATDAILFGTPAQISDELDNRDSGTFFNDEAARIIFGDDADEFQSE
#oth            ..1...1.1...111.11..11111.1.111.11.1..1..111111
rrnAC1333       ::::::::V:::::::::::::::::::::V:MD::::E::S:::--
NP4960A         ::P:::L:::::DEL:EK::EEGTS:P:EP:::::V::::::SVI::