2 genomes BUD4242 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - pNG7168 rrnAC2345 - - - - - - HQ2328A

Pairwise sequence scores
Consensus score	1044	rrnAC2345	pNG7168	HQ2328A
515	rrnAC2345	1518	335	332
739	pNG7168	335	1043	518
721	HQ2328A	332	518	1094

205 symbols
consensus       ------------------------------AMSEATYPIAAVPT----------------
#oth            111111111111111111111111111111221.21112121111111111111111111
rrnAC2345       MTAVRPLVLVAIAVLVSLAGCGALFGSGGE:P::::VTP:::::DEPEAAETTSGYWGNV
pNG7168         ::::::::::::::::::::::::::::::-:::RE::V:DL::::::::::::::::::
HQ2328A         ::::::::::::::::::::::::::::::MTT:Y::::TT:TV::::::::::::::::

consensus       ------------------PRCTYDPGDVVAIQLDALANNDDPAENAGINTAYNFASPANR
#oth            111111111111111111.221121121121.12.122..2.2211..2.111....1..
rrnAC2345       SVDANRSAVTQPRVLELR:N:ERP::L::H::VL::Q:::-::T:E::::TWQ::::S::
pNG7168         ::::::::::::::::::::E::S:::A:SL:::::ET::::F:::::M:::::::::::
HQ2328A         :::::::::::::::::::ES:::AEE:I::::S:F:D::S:VPD:::K:::::::::::

consensus       RATGPLDRFRAMVQSNRYAPMIDAEEAVRGPLERDGDSAQQRVTVTGADGRTTTYRFGVS
#oth            12...212.2211.12212.111221112..111.112.2.1..1112112.11.11111
rrnAC2345       DL:::YAN:VRTI::G-FE:LLN:TGVRY:::D::::T:S:P:::VD:NET::R::WT:E
pNG7168         :S:::::::I:::::PQ:R::::F:::::::V:::ENY:E:::::::P:::::::E::L:
HQ2328A         :::::F:Q::Q:::N::::::::HS:::T::::Q::::::::::L::E::Q:V:::::::

consensus       KQEEAPER------GCWQTDRVARA
#oth            112221221111111..2.11.222
rrnAC2345       ::T:::YE:::::::::M:AG::P:
pNG7168         V:SVGEF:::::::::::::::VVV
HQ2328A         :Y:ST::DETIPEPN::L::::L:E