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2 genomes BUD4244 3 proteins
a Hsa
Halobacterium
sp. NRC-1
b Hma
Haloarcula
marismortui
f Hvo
Haloferax
volcanii
g Hbo
Halogeometricum
borinquense
h Hmu
Halomicrobium
mukohataei
i Hut
Halorhabdus
utahensis
j Hla
Halorubrum
lacusprofundi
q Nph
Natronomonas
pharaonis
x Hwa
Haloquadratum
walsbyi
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pNG6094

rrnB0041

- - - - - -

HQ2033A

Pairwise sequence scores
Consensus score2892 pNG6094 rrnB0041 HQ2033A
1314pNG6094 2626 762 720
1958rrnB0041 762 2986 1430
1985HQ2033A 720 1430 2891

411 symbols
consensus       ----MGSGPDLERNAHEPLRRALQAEDIAFVNDLNDRIGAVVEDAPALAGDYCIGDVSDY
#oth            111111111221222212122212211122.221.22.121..21111222122.111.1
pNG6094         :::::ADA::T::Q:V::-----E:G:VLS:SQ:::::AS::::::::D:VR:::E:T:L
rrnB0041        :::::::::E:TQTSL:T:QE:::T:R:TY:DT::ED::::::S:DQ::F::VV::::::
HQ2033A         MGIES:::DTK:M:D:AS:::E:GS::::::::I:TQ::DL::GS::IEHE:IL::I:::

consensus       GQSSNAHGHFDLVHEDSELHCVIFANRRRKIDADIEDGIQVAVEGDISYYEDGGNVSIIV
#oth            221.1212111.11111211.11122122121121.1.221112.111.1121.211221
pNG6094         H:N:T:-LY:T:TDG:A::P:M:W:::Y::M::EL:::TE:IL::::D:WTE::KIDLKP
rrnB0041        :V:::D:V:L:::::G:TI:::L:GYK:SA:::T::::M::::K:SL::::::::::V::
HQ2033A         SI:::G:::::::::::S::::::RS:VD:LQN:::Q::LA::S:::::::SE:S:::L:

consensus       RDIIAVGDGDYQAAYERNRQELAERGLLDDEAKQALPAFPERIGIATSARSDARQDAQTS
#oth            21112..2.211221121112.212.21.212..21.21.111.11..221...2.1211
pNG6094         WEV:V:::::QA::V::L:S::E:::WF:::Q::RP::::::V:VV::L:G:::Y:I:SA
rrnB0041        E::VE::E:T::RI::Q:::L:DSD::::P:H:::::D:::::::::::T::::M::I::
HQ2033A         :::::::Q:I::QT:QE:K:T:::S:Y::ES:::S::YL:KH::::::GD:::::::V::

consensus       IHEQYPDVDILVQDTSVQGNDALMSIMNAISELDDNARVDLIILTRGGGSDKHLRVFNEE
#oth            ..111.111.211111...21.22.1121.12..1221112.111....1111.11..12
pNG6094         ::::D:T:::::K:AT:::SE:PT::A:G:HH::RSED::S::VG::::::SN:QA::T:
rrnB0041        :::R::::::VI:N:::::D::M::::G:::::::DP:::V:V::::::::::::::::T
HQ2033A         ::D::::IN:T::::::::::::V:L:D:::S::::::IK:::::::::AE::::::::I

consensus       PLCRVIHETNTPIVVGVGHENDRTLADAVADRRVMTPTEAGNIVPERDRLQAELERLEAR
#oth            11111.1212..1.111..12..11.12...2111...11.2211122212211121222
pNG6094         RVAEA:FTA:::::TAI::TD::LI::R:::MAAI:::A::EYIA---------------
rrnB0041        :::::::K:E::V::::::::::::::E:::::::::::::::::::TT:E::::T::E:
HQ2033A         :::::::::T::::::::::T:::::G::::T:::::::V:KT:::K::::E:::::S:D

consensus       LNHAYTNTAEQAIEQRNDRLNRAYRRQVASDLRALEARLNAAYET---------------
#oth            11211121222221222.1.221121212111222122.221.1.111111111111111
pNG6094         -------------KS:::F:--------:::IGP::QQ:E::::::::::::::::::::
rrnB0041        ::T:::E:::TTL:TMD:::T:::::T:E:::S:F::E:DRT:D:HVRDELTDLANRLEQ
HQ2033A         ::::::::VK:::::KH::::S::D:::TDE::SVSN:::T:::::::::::::::::::

consensus       ARQQHAHERERAQAV----APERRQRRRQRLIIVVLGILLVAAIALILGNI
#oth            221122111.1122111111122122212211111.22.112222111121
pNG6094         FE:E:E::Q:L:E::EEAT:::GLSPVYYKVA::::LV::LLIT::W::V:
rrnB0041        ::T:YDQQ:::E:E::::::AH::::::LL::L:A::L:V::LLLY::LPL
HQ2033A         VK::K:::::::KMI::::K:YE:TIQ::::::G::S::::V::I::T:::