2 genomes BUD4245 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC0724 - - - - - - HQ3505A HQ3597A

Pairwise sequence scores
Consensus score	1268	HQ3597A	rrnAC0724	HQ3505A
636	HQ3597A	1371	320	295
827	rrnAC0724	320	1380	380
653	HQ3505A	295	380	1125

194 symbols
consensus       MLHSARGR-------IAVIIALLVGLAPACPL-------EELGDYPADDALAENYERYVG
#oth            .111221.1111111121222.11.21212111111111211.21.2212121211211.
HQ3597A         :::T:N::::::::::F::LL::T:::VL:::YAQQPVNP:::V::D::EFG:TP:Q:I:
rrnAC0724       ::::WV::AAAICGLL::LF::M::FGT:T:A:::::::S:::::::E::::AD:D::::
HQ3505A         :IL:L:T:::::::::LIV:I::::Y:::LF:::::::::IR:ET:----:Y::::SH::

consensus       EIV-DLNGIVQQTDPVEIAVE---AANGDR----LALMVRDLARAVDEGDKIRVFGTLGP
#oth            12.1222.1.2212.11.211111222.2.111112121112221112.112111.1121
HQ3597A         D:::VTG:::::VS:LI:EI::::TTQ:P:::::-E::IV:T:LRPEV:::V::::I:TA
rrnAC0724       :S::QVT:T:TG:E:::::::YEY::::K:YSGT::IV::NVD::::::ESLQ:Y:::::
HQ3505A         :T:Y::::::VS::::::S:A:::---::::::::R:T::::NM:::S:::::I:::VK:

consensus       DRTIRAENGIVV-PATNRLAAYLISFLAGLWALGRLIRDWRIDWQRGALCRRDTP--LRD
#oth            1211211.2211112122222111.11....2.2.11121221.2221121111111112
HQ3597A         AG:V:SL::F::::R:G:WY:WG::::::::V:T::::H:TV::T:IRFQ:::::IS:::
rrnAC0724       :W::T:::SVS::::::YV:M::V:A:::::T::::VCG::LN::T::::::EE:::::P
HQ3505A         ::V:E:::V::AGQSPSQ:RT:::::I::::::F:I:::FD:::GEL::VPA::Q::---

consensus       IRALRTQLQENRD-
#oth            22222122112211
HQ3597A         VCRVP:S:GG:Q:A
rrnAC0724       :::::::V::V:A:
HQ3505A         --------::SH::